Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   WHL98_RS13700 Genome accession   NZ_CP148104
Coordinates   2609798..2610565 (-) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   A0AAE2SJ05
Organism   Bacillus subtilis subsp. subtilis isolate FELIX_MS438     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2604798..2615565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL98_RS13680 ppsR 2604973..2605785 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  WHL98_RS13685 ccpN 2605811..2606449 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  WHL98_RS13690 glyS 2606582..2608621 (-) 2040 WP_003230059.1 glycine--tRNA ligase subunit beta -
  WHL98_RS13695 glyQ 2608614..2609501 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  WHL98_RS13700 recO 2609798..2610565 (-) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  WHL98_RS13705 yqzL 2610602..2610745 (-) 144 WP_003230053.1 YqzL family protein -
  WHL98_RS13710 era 2610893..2611798 (-) 906 WP_003230051.1 GTPase Era -
  WHL98_RS13715 cdd 2611779..2612189 (-) 411 WP_003230049.1 cytidine deaminase -
  WHL98_RS13720 unpK 2612308..2612679 (-) 372 WP_004398824.1 diacylglycerol kinase family protein -
  WHL98_RS13725 ybeY 2612660..2613133 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  WHL98_RS13730 pgpH 2613134..2615269 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=950610 WHL98_RS13700 WP_003230055.1 2609798..2610565(-) (recO) [Bacillus subtilis subsp. subtilis isolate FELIX_MS438]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=950610 WHL98_RS13700 WP_003230055.1 2609798..2610565(-) (recO) [Bacillus subtilis subsp. subtilis isolate FELIX_MS438]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1