Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   WHL98_RS13170 Genome accession   NZ_CP148104
Coordinates   2518875..2519678 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis isolate FELIX_MS438     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2513875..2524678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL98_RS13145 glpQ 2515021..2515752 (-) 732 WP_003230288.1 glycerophosphodiester phosphodiesterase -
  WHL98_RS13150 yqiI 2515831..2516451 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  WHL98_RS13155 yqiH 2516466..2516759 (-) 294 WP_003230284.1 lipoprotein -
  WHL98_RS13160 - 2517067..2517219 (+) 153 WP_003230276.1 hypothetical protein -
  WHL98_RS13165 yqiG 2517292..2518410 (+) 1119 WP_004398691.1 NADH-dependent flavin oxidoreductase -
  WHL98_RS13170 spo0A 2518875..2519678 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  WHL98_RS13175 spoIVB 2519954..2521234 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  WHL98_RS13180 recN 2521409..2523139 (-) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  WHL98_RS13185 argR 2523176..2523625 (-) 450 WP_003230265.1 arginine repressor ArgR -
  WHL98_RS13190 yqxC 2523723..2524568 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=950599 WHL98_RS13170 WP_003226427.1 2518875..2519678(-) (spo0A) [Bacillus subtilis subsp. subtilis isolate FELIX_MS438]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=950599 WHL98_RS13170 WP_003226427.1 2518875..2519678(-) (spo0A) [Bacillus subtilis subsp. subtilis isolate FELIX_MS438]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATCTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1