Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   WHL98_RS12185 Genome accession   NZ_CP148104
Coordinates   2341656..2342276 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis isolate FELIX_MS438     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2336656..2347276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL98_RS12145 ypqE 2337787..2338293 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  WHL98_RS12150 ypqA 2338431..2338850 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  WHL98_RS12155 yppG 2338871..2339248 (-) 378 WP_004398696.1 YppG family protein -
  WHL98_RS12160 yppF 2339436..2339624 (+) 189 WP_003230690.1 YppF family protein -
  WHL98_RS12165 yppE 2339663..2340034 (-) 372 WP_003246080.1 YppE family protein -
  WHL98_RS12170 yppD 2340080..2340325 (-) 246 WP_004398488.1 YppD family protein -
  WHL98_RS12175 sspM 2340524..2340628 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  WHL98_RS12180 yppC 2340653..2341615 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  WHL98_RS12185 recU 2341656..2342276 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  WHL98_RS12190 ponA 2342298..2345042 (+) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  WHL98_RS12195 ypoC 2345118..2345612 (-) 495 WP_009967579.1 YpoC family protein -
  WHL98_RS12200 nth 2345609..2346268 (-) 660 WP_009967580.1 endonuclease III -
  WHL98_RS12205 dnaD 2346287..2346985 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=950598 WHL98_RS12185 WP_004399067.1 2341656..2342276(+) (recU) [Bacillus subtilis subsp. subtilis isolate FELIX_MS438]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=950598 WHL98_RS12185 WP_004399067.1 2341656..2342276(+) (recU) [Bacillus subtilis subsp. subtilis isolate FELIX_MS438]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1