Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   WHL98_RS07985 Genome accession   NZ_CP148104
Coordinates   1518721..1518999 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis subsp. subtilis isolate FELIX_MS438     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1513721..1523999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL98_RS07965 - 1514908..1515819 (+) 912 WP_003245639.1 ketopantoate reductase family protein -
  WHL98_RS07970 ampS 1515853..1517085 (-) 1233 WP_003232341.1 aminopeptidase -
  WHL98_RS07975 ykpC 1517195..1517329 (-) 135 WP_003238865.1 protein YkpC -
  WHL98_RS07980 mreBH 1517430..1518437 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  WHL98_RS07985 abrB 1518721..1518999 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  WHL98_RS07990 kinC 1519189..1520475 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  WHL98_RS07995 ykqA 1520491..1521324 (+) 834 WP_003245146.1 gamma-glutamylcyclotransferase -
  WHL98_RS08000 ktrC 1521387..1522052 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  WHL98_RS08005 ade 1522207..1523940 (+) 1734 WP_003245362.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=950593 WHL98_RS07985 WP_003244728.1 1518721..1518999(+) (abrB) [Bacillus subtilis subsp. subtilis isolate FELIX_MS438]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=950593 WHL98_RS07985 WP_003244728.1 1518721..1518999(+) (abrB) [Bacillus subtilis subsp. subtilis isolate FELIX_MS438]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576