Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   WHL98_RS06255 Genome accession   NZ_CP148104
Coordinates   1207482..1208435 (+) Length   317 a.a.
NCBI ID   WP_003245494.1    Uniprot ID   A0AAE2SG99
Organism   Bacillus subtilis subsp. subtilis isolate FELIX_MS438     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1202482..1213435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL98_RS06230 argF 1204314..1205273 (+) 960 WP_003232980.1 ornithine carbamoyltransferase -
  WHL98_RS06235 yjzC 1205359..1205538 (+) 180 WP_003245356.1 YjzC family protein -
  WHL98_RS06240 yjzD 1205584..1205769 (-) 186 WP_003245236.1 DUF2929 domain-containing protein -
  WHL98_RS06245 - 1206018..1206752 (+) 735 WP_003245223.1 hypothetical protein -
  WHL98_RS06250 - 1206834..1207391 (+) 558 WP_003232974.1 hypothetical protein -
  WHL98_RS06255 med 1207482..1208435 (+) 954 WP_003245494.1 transcriptional regulator Med Regulator
  WHL98_RS06260 comZ 1208450..1208641 (+) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  WHL98_RS06265 yjzB 1208671..1208910 (-) 240 WP_003232972.1 spore coat protein YjzB -
  WHL98_RS06270 fabH 1209075..1210013 (+) 939 WP_003232971.1 beta-ketoacyl-ACP synthase III -
  WHL98_RS06275 fabF 1210036..1211277 (+) 1242 WP_003244890.1 beta-ketoacyl-ACP synthase II -
  WHL98_RS06280 yjaZ 1211353..1212138 (+) 786 WP_003232967.1 DUF2268 domain-containing protein -
  WHL98_RS06285 appD 1212330..1213316 (+) 987 WP_003232965.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35310.80 Da        Isoelectric Point: 4.5457

>NTDB_id=950582 WHL98_RS06255 WP_003245494.1 1207482..1208435(+) (med) [Bacillus subtilis subsp. subtilis isolate FELIX_MS438]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDQDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=950582 WHL98_RS06255 WP_003245494.1 1207482..1208435(+) (med) [Bacillus subtilis subsp. subtilis isolate FELIX_MS438]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACAAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG
CCTGAGGTTGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATAGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAACACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGATC
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

100

100

1