Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   WHL98_RS05800 Genome accession   NZ_CP148104
Coordinates   1117962..1118540 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis subsp. subtilis isolate FELIX_MS438     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1112962..1123540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL98_RS05780 hemAT 1113473..1114771 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  WHL98_RS05785 yhfW 1114910..1116439 (-) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  WHL98_RS05790 yhxC 1116551..1117408 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  WHL98_RS05795 yhzC 1117436..1117669 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  WHL98_RS05800 comK 1117962..1118540 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  WHL98_RS05805 yhxD 1118587..1119486 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  WHL98_RS05810 yhjA 1119703..1119972 (+) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  WHL98_RS05815 yhjB 1120015..1121484 (-) 1470 WP_003233134.1 sodium:solute symporter -
  WHL98_RS05820 yhjC 1121481..1121681 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  WHL98_RS05825 - 1121889..1122251 (-) 363 WP_003233132.1 hypothetical protein -
  WHL98_RS05830 yhjE 1122403..1123026 (+) 624 WP_010886465.1 VTT domain-containing protein -
  WHL98_RS05835 lepB 1123028..1123534 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=950579 WHL98_RS05800 WP_003245329.1 1117962..1118540(+) (comK) [Bacillus subtilis subsp. subtilis isolate FELIX_MS438]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=950579 WHL98_RS05800 WP_003245329.1 1117962..1118540(+) (comK) [Bacillus subtilis subsp. subtilis isolate FELIX_MS438]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1