Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   WHL49_RS18010 Genome accession   NZ_CP148103
Coordinates   3485977..3486666 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis subsp. subtilis isolate FELIX_MS361     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3480977..3491666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL49_RS17975 flgN 3481157..3481639 (-) 483 WP_003227999.1 flagellar protein FlgN -
  WHL49_RS17980 flgM 3481655..3481921 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  WHL49_RS17985 yvyF 3482002..3482421 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  WHL49_RS17990 comFC 3482495..3483217 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  WHL49_RS17995 comFB 3483181..3483477 (-) 297 WP_003227989.1 late competence protein ComFB -
  WHL49_RS18000 comFA 3483537..3484928 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  WHL49_RS18005 fakBA 3485034..3485879 (-) 846 WP_003244125.1 DegV family protein -
  WHL49_RS18010 degU 3485977..3486666 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  WHL49_RS18015 degS 3486749..3487906 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  WHL49_RS18020 yvyE 3488123..3488776 (+) 654 WP_003227979.1 YigZ family protein -
  WHL49_RS18025 tagV 3488776..3489951 (+) 1176 WP_003244117.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  WHL49_RS18030 tagO 3490024..3491100 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=950546 WHL49_RS18010 WP_003219701.1 3485977..3486666(-) (degU) [Bacillus subtilis subsp. subtilis isolate FELIX_MS361]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=950546 WHL49_RS18010 WP_003219701.1 3485977..3486666(-) (degU) [Bacillus subtilis subsp. subtilis isolate FELIX_MS361]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1