Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   WHL49_RS12535 Genome accession   NZ_CP148103
Coordinates   2450316..2451083 (-) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   A0AAE2SJ05
Organism   Bacillus subtilis subsp. subtilis isolate FELIX_MS361     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2445316..2456083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL49_RS12515 ppsR 2445491..2446303 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  WHL49_RS12520 ccpN 2446329..2446967 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  WHL49_RS12525 glyS 2447100..2449139 (-) 2040 WP_003230059.1 glycine--tRNA ligase subunit beta -
  WHL49_RS12530 glyQ 2449132..2450019 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  WHL49_RS12535 recO 2450316..2451083 (-) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  WHL49_RS12540 yqzL 2451120..2451263 (-) 144 WP_003230053.1 YqzL family protein -
  WHL49_RS12545 era 2451411..2452316 (-) 906 WP_003230051.1 GTPase Era -
  WHL49_RS12550 cdd 2452297..2452707 (-) 411 WP_003230049.1 cytidine deaminase -
  WHL49_RS12555 unpK 2452826..2453197 (-) 372 WP_004398824.1 diacylglycerol kinase family protein -
  WHL49_RS12560 ybeY 2453178..2453651 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  WHL49_RS12565 pgpH 2453652..2455787 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=950524 WHL49_RS12535 WP_003230055.1 2450316..2451083(-) (recO) [Bacillus subtilis subsp. subtilis isolate FELIX_MS361]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=950524 WHL49_RS12535 WP_003230055.1 2450316..2451083(-) (recO) [Bacillus subtilis subsp. subtilis isolate FELIX_MS361]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1