Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   WHL49_RS12005 Genome accession   NZ_CP148103
Coordinates   2359392..2360195 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis isolate FELIX_MS361     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2354392..2365195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL49_RS11980 glpQ 2355538..2356269 (-) 732 WP_003230288.1 glycerophosphodiester phosphodiesterase -
  WHL49_RS11985 yqiI 2356348..2356968 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  WHL49_RS11990 yqiH 2356983..2357276 (-) 294 WP_003230284.1 lipoprotein -
  WHL49_RS11995 - 2357584..2357736 (+) 153 WP_003230276.1 hypothetical protein -
  WHL49_RS12000 yqiG 2357809..2358927 (+) 1119 WP_004398691.1 NADH-dependent flavin oxidoreductase -
  WHL49_RS12005 spo0A 2359392..2360195 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  WHL49_RS12010 spoIVB 2360471..2361751 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  WHL49_RS12015 recN 2361926..2363656 (-) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  WHL49_RS12020 argR 2363693..2364142 (-) 450 WP_003230265.1 arginine repressor ArgR -
  WHL49_RS12025 yqxC 2364240..2365085 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=950513 WHL49_RS12005 WP_003226427.1 2359392..2360195(-) (spo0A) [Bacillus subtilis subsp. subtilis isolate FELIX_MS361]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=950513 WHL49_RS12005 WP_003226427.1 2359392..2360195(-) (spo0A) [Bacillus subtilis subsp. subtilis isolate FELIX_MS361]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATCTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1