Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   WHL49_RS11020 Genome accession   NZ_CP148103
Coordinates   2182168..2182788 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis isolate FELIX_MS361     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2177168..2187788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL49_RS10980 ypqE 2178299..2178805 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  WHL49_RS10985 ypqA 2178943..2179362 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  WHL49_RS10990 yppG 2179383..2179760 (-) 378 WP_004398696.1 YppG family protein -
  WHL49_RS10995 yppF 2179948..2180136 (+) 189 WP_003230690.1 YppF family protein -
  WHL49_RS11000 yppE 2180175..2180546 (-) 372 WP_003246080.1 YppE family protein -
  WHL49_RS11005 yppD 2180592..2180837 (-) 246 WP_004398488.1 YppD family protein -
  WHL49_RS11010 sspM 2181036..2181140 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  WHL49_RS11015 yppC 2181165..2182127 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  WHL49_RS11020 recU 2182168..2182788 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  WHL49_RS11025 ponA 2182810..2185554 (+) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  WHL49_RS11030 ypoC 2185630..2186124 (-) 495 WP_009967579.1 YpoC family protein -
  WHL49_RS11035 nth 2186121..2186780 (-) 660 WP_009967580.1 endonuclease III -
  WHL49_RS11040 dnaD 2186799..2187497 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=950512 WHL49_RS11020 WP_004399067.1 2182168..2182788(+) (recU) [Bacillus subtilis subsp. subtilis isolate FELIX_MS361]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=950512 WHL49_RS11020 WP_004399067.1 2182168..2182788(+) (recU) [Bacillus subtilis subsp. subtilis isolate FELIX_MS361]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1