Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   WHL49_RS07845 Genome accession   NZ_CP148103
Coordinates   1497750..1498028 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis subsp. subtilis isolate FELIX_MS361     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1492750..1503028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL49_RS07825 - 1493937..1494848 (+) 912 WP_003245639.1 ketopantoate reductase family protein -
  WHL49_RS07830 ampS 1494882..1496114 (-) 1233 WP_003232341.1 aminopeptidase -
  WHL49_RS07835 ykpC 1496224..1496358 (-) 135 WP_003238865.1 protein YkpC -
  WHL49_RS07840 mreBH 1496459..1497466 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  WHL49_RS07845 abrB 1497750..1498028 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  WHL49_RS07850 kinC 1498218..1499504 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  WHL49_RS07855 ykqA 1499520..1500353 (+) 834 WP_003245146.1 gamma-glutamylcyclotransferase -
  WHL49_RS07860 ktrC 1500416..1501081 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  WHL49_RS07865 ade 1501236..1502969 (+) 1734 WP_003245362.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=950507 WHL49_RS07845 WP_003244728.1 1497750..1498028(+) (abrB) [Bacillus subtilis subsp. subtilis isolate FELIX_MS361]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=950507 WHL49_RS07845 WP_003244728.1 1497750..1498028(+) (abrB) [Bacillus subtilis subsp. subtilis isolate FELIX_MS361]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576