Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   WHL49_RS05665 Genome accession   NZ_CP148103
Coordinates   1096991..1097569 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis subsp. subtilis isolate FELIX_MS361     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1091991..1102569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL49_RS05645 hemAT 1092502..1093800 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  WHL49_RS05650 yhfW 1093939..1095468 (-) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  WHL49_RS05655 yhxC 1095580..1096437 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  WHL49_RS05660 yhzC 1096465..1096698 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  WHL49_RS05665 comK 1096991..1097569 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  WHL49_RS05670 yhxD 1097616..1098515 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  WHL49_RS05675 yhjA 1098732..1099001 (+) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  WHL49_RS05680 yhjB 1099044..1100513 (-) 1470 WP_003233134.1 sodium:solute symporter -
  WHL49_RS05685 yhjC 1100510..1100710 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  WHL49_RS05690 - 1100918..1101280 (-) 363 WP_003233132.1 hypothetical protein -
  WHL49_RS05695 yhjE 1101432..1102055 (+) 624 WP_010886465.1 VTT domain-containing protein -
  WHL49_RS05700 lepB 1102057..1102563 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=950493 WHL49_RS05665 WP_003245329.1 1096991..1097569(+) (comK) [Bacillus subtilis subsp. subtilis isolate FELIX_MS361]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=950493 WHL49_RS05665 WP_003245329.1 1096991..1097569(+) (comK) [Bacillus subtilis subsp. subtilis isolate FELIX_MS361]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1