Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   WHL49_RS01990 Genome accession   NZ_CP148103
Coordinates   372554..373003 (-) Length   149 a.a.
NCBI ID   WP_003246436.1    Uniprot ID   A0AAE2SFQ0
Organism   Bacillus subtilis subsp. subtilis isolate FELIX_MS361     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 367554..378003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL49_RS01955 yckA 367705..368385 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  WHL49_RS01960 yckB 368395..369258 (-) 864 WP_009966510.1 transporter substrate-binding domain-containing protein -
  WHL49_RS01965 - 369420..369617 (+) 198 WP_119122841.1 hypothetical protein -
  WHL49_RS01970 yckC 369636..370091 (+) 456 WP_003246356.1 RDD family protein -
  WHL49_RS01975 yckD 370173..370505 (+) 333 WP_003246247.1 YckD family protein -
  WHL49_RS01980 bglC 370659..372092 (+) 1434 WP_003246242.1 6-phospho-beta-glucosidase -
  WHL49_RS01985 nin/comJ 372129..372527 (-) 399 WP_003246342.1 DNA-entry nuclease inhibitor Regulator
  WHL49_RS01990 nucA/comI 372554..373003 (-) 450 WP_003246436.1 DNA-entry nuclease Machinery gene
  WHL49_RS01995 tlpC 373171..374892 (-) 1722 WP_003246498.1 methyl-accepting chemotaxis protein TlpC -
  WHL49_RS02000 hxlB 375003..375560 (-) 558 WP_003246343.1 6-phospho-3-hexuloisomerase -
  WHL49_RS02005 hxlA 375566..376198 (-) 633 WP_003246452.1 3-hexulose-6-phosphate synthase -
  WHL49_RS02010 hxlR 376431..376793 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16486.48 Da        Isoelectric Point: 4.6274

>NTDB_id=950477 WHL49_RS01990 WP_003246436.1 372554..373003(-) (nucA/comI) [Bacillus subtilis subsp. subtilis isolate FELIX_MS361]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETMAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHRLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=950477 WHL49_RS01990 WP_003246436.1 372554..373003(-) (nucA/comI) [Bacillus subtilis subsp. subtilis isolate FELIX_MS361]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATGGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAAGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
GGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

100

100

1