Detailed information NTG0950472

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACHP5O_RS05025
• Genome accession: NZ_CP172152
• Coordinates: 1043740..1044732 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain GF31
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1038740..1049732

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACHP5O_RS04995 (ACHP5O_04995)	ispD	1038801..1039511 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACHP5O_RS05000 (ACHP5O_05000)	ispF	1039511..1039990 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACHP5O_RS05005 (ACHP5O_05005)	truD	1039987..1041036 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ACHP5O_RS05010 (ACHP5O_05010)	surE	1041017..1041778 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACHP5O_RS05015 (ACHP5O_05015)	pcm	1041772..1042398 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACHP5O_RS05020 (ACHP5O_05020)	nlpD	1042583..1043677 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
ACHP5O_RS05025 (ACHP5O_05025)	rpoS	1043740..1044732 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACHP5O_RS05030 (ACHP5O_05030)	ygbN	1044826..1046190 (-)	1365	WP_000104460.1	GntP family transporter	-
ACHP5O_RS05035 (ACHP5O_05035)	ygbM	1046279..1047055 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
ACHP5O_RS05040 (ACHP5O_05040)	ygbL	1047060..1047698 (-)	639	WP_001278994.1	aldolase	-
ACHP5O_RS05045 (ACHP5O_05045)	otnK	1047695..1048957 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=950472 ACHP5O_RS05025 WP_000081550.1 1043740..1044732(+) (rpoS) [Escherichia coli strain GF31]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=950472 ACHP5O_RS05025 WP_000081550.1 1043740..1044732(+) (rpoS) [Escherichia coli strain GF31]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715