Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   WHL51_RS13725 Genome accession   NZ_CP148102
Coordinates   2661796..2662542 (-) Length   248 a.a.
NCBI ID   WP_003222598.1    Uniprot ID   -
Organism   Bacillus spizizenii str. W23     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2656796..2667542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL51_RS13700 mreC 2657203..2658075 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  WHL51_RS13705 mreB 2658106..2659119 (-) 1014 WP_003222607.1 cell shape-determining protein MreB -
  WHL51_RS13710 radC 2659211..2659906 (-) 696 WP_003222604.1 DNA repair protein RadC -
  WHL51_RS13715 - 2659943..2660512 (-) 570 WP_003222602.1 Maf family nucleotide pyrophosphatase -
  WHL51_RS13720 - 2660664..2661662 (-) 999 WP_003222600.1 SPOR domain-containing protein -
  WHL51_RS13725 comC 2661796..2662542 (-) 747 WP_003222598.1 A24 family peptidase Machinery gene
  WHL51_RS13730 - 2662679..2663971 (-) 1293 WP_003222596.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  WHL51_RS13735 valS 2664032..2666674 (-) 2643 WP_003222594.1 valine--tRNA ligase -
  WHL51_RS13740 - 2667124..2667315 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26645.26 Da        Isoelectric Point: 9.6309

>NTDB_id=950448 WHL51_RS13725 WP_003222598.1 2661796..2662542(-) (comC) [Bacillus spizizenii str. W23]
MLLILFLLGLILGSFYYTAGCRIPVHISIITPRSACSFCRRTLTAAELIPILSFLFQRGKCKSCGHRISFMYPAAELVTA
CLFAAAEIRFGSSPELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYVSLLGAAAGFLFLTLI
AAITHGGIGGGDIKLFAVIGFMLGVKMLAAAFFFSVLIGALYGAATVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYMKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=950448 WHL51_RS13725 WP_003222598.1 2661796..2662542(-) (comC) [Bacillus spizizenii str. W23]
ATGCTTCTCATTCTTTTTCTCCTCGGGCTGATTCTTGGTTCATTTTATTATACGGCCGGGTGCCGTATCCCCGTACATAT
ATCCATTATCACGCCCCGTTCGGCATGCTCGTTTTGTCGGCGGACATTAACCGCGGCAGAATTAATTCCCATCCTGTCAT
TCCTTTTCCAAAGGGGCAAATGTAAAAGCTGCGGACATAGAATTTCTTTTATGTATCCCGCGGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCTGCAGAAATACGCTTTGGCTCATCTCCGGAACTATTTCCTGCTGTTGTGTTTATCTCTCTTCTCAT
CATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATCTTGATTTTCTTTCTTCCCTTTTTGGCGGCAG
CAAGATTGATTTCTCCGCTTGATTCCTGGTATGTCAGCCTGTTAGGTGCGGCCGCCGGATTTCTTTTCCTGACCTTAATT
GCCGCAATCACCCATGGAGGAATAGGGGGAGGAGATATTAAATTGTTTGCGGTGATTGGCTTTATGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTGTATGGAGCGGCAACTGTCCTGACTGGAAGACTCGCCA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCAATTGCGGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATGAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

91.532

100

0.915