Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   WHL51_RS12370 Genome accession   NZ_CP148102
Coordinates   2422150..2423220 (-) Length   356 a.a.
NCBI ID   WP_003226312.1    Uniprot ID   -
Organism   Bacillus spizizenii str. W23     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2417150..2428220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL51_RS12325 tapA 2417631..2418392 (-) 762 WP_003226335.1 amyloid fiber anchoring/assembly protein TapA -
  WHL51_RS12330 - 2418661..2418987 (+) 327 WP_079996407.1 YqzG/YhdC family protein -
  WHL51_RS12335 - 2419029..2419208 (-) 180 WP_003226330.1 YqzE family protein -
  WHL51_RS12340 comGG 2419280..2419654 (-) 375 WP_003226328.1 competence type IV pilus minor pilin ComGG Machinery gene
  WHL51_RS12345 comGF 2419655..2420038 (-) 384 WP_032727308.1 competence type IV pilus minor pilin ComGF Machinery gene
  WHL51_RS12350 comGE 2420064..2420411 (-) 348 WP_003226323.1 competence type IV pilus minor pilin ComGE Machinery gene
  WHL51_RS12355 comGD 2420395..2420826 (-) 432 WP_003226321.1 competence type IV pilus minor pilin ComGD Machinery gene
  WHL51_RS12360 comGC 2420816..2421112 (-) 297 WP_003226319.1 comG operon protein ComGC Machinery gene
  WHL51_RS12365 comGB 2421126..2422163 (-) 1038 WP_003226315.1 competence type IV pilus assembly protein ComGB Machinery gene
  WHL51_RS12370 comGA 2422150..2423220 (-) 1071 WP_003226312.1 competence protein ComGA Machinery gene
  WHL51_RS12375 - 2423433..2423843 (-) 411 WP_032727412.1 CBS domain-containing protein -
  WHL51_RS12380 - 2423906..2424859 (-) 954 WP_003226308.1 magnesium transporter CorA family protein -
  WHL51_RS12385 - 2425003..2426331 (+) 1329 WP_044428668.1 hemolysin family protein -
  WHL51_RS12390 - 2426383..2427222 (-) 840 WP_003226304.1 STAS domain-containing protein -
  WHL51_RS12400 mgsR 2427448..2427825 (-) 378 WP_003226302.1 transcriptional regulator MgsR -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40489.75 Da        Isoelectric Point: 9.0214

>NTDB_id=950439 WHL51_RS12370 WP_003226312.1 2422150..2423220(-) (comGA) [Bacillus spizizenii str. W23]
MDSIEKISKTLIEEAYITKASDIHIVPRERDAIIHFRVDHALLKKRHMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLEEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAKIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQLRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRHIIRKGIALGYLTTNNYDRWVYHETD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=950439 WHL51_RS12370 WP_003226312.1 2422150..2423220(-) (comGA) [Bacillus spizizenii str. W23]
TTGGATTCAATAGAAAAGATAAGCAAAACCTTGATTGAAGAGGCATATATAACAAAGGCTTCTGACATTCACATTGTACC
GAGGGAGCGGGACGCCATCATTCATTTTCGGGTTGATCATGCCTTGCTGAAAAAAAGGCACATGAAAAAAGAAGAGTGCG
TAAGGCTGATTTCACATTTTAAATTTCTCTCAGCGATGGACATAGGGGAAAGGAGGAAGCCGCAAAATGGTTCGCTTACA
TTAAAGCTAGAGGAGGGAAATGTTCATTTAAGAATGTCAACGCTCCCCACAATTAATGAAGAAAGCCTTGTGATCAGAGT
GATGCCTCAATATAATATCCCTTCGATTGATAAGCTGTCATTATTTCCGAAGACAGGAGCCACTTTACTCTCATTTTTAA
AACATTCCCACGGCATGCTCATTTTTACCGGGCCGACTGGTTCAGGGAAGACCACCACATTATACTCTCTTGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACACTGGAGGACCCTGTTGAAACAAGGGACGAGGATGTTCTTCAGGTGCA
GGTGAATGAAAAAGCCGGTGTGACATATTCCGCAGGGCTGAAGGCTATTTTGCGCCATGACCCGGATATGATTATCTTAG
GTGAGATCAGAGACGCCGAAACAGCTAAAATCGCGGTACGGGCAGCGATGACGGGGCATCTGGTGCTGACGAGCCTTCAT
ACGAGAGATGCGAAGGGCGCGATTTACAGGCTGCTTGAATTCGGCATCAATATGAATGAAATCGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGCCGCCAGTTAC
GAAACACCAGGAGAGCAAGCGTTTATGAGCTCCTTTACGGAAAAAATCTTCAGCAATGTATTCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTACGTCACATTATCCGAAAAGGAATTGCACTCGGCTATTTGACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAACAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

97.472

100

0.975