Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   WHL51_RS05955 Genome accession   NZ_CP148102
Coordinates   1164927..1165880 (+) Length   317 a.a.
NCBI ID   WP_003224557.1    Uniprot ID   -
Organism   Bacillus spizizenii str. W23     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1159927..1170880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL51_RS05930 argF 1161755..1162699 (+) 945 WP_003224547.1 ornithine carbamoyltransferase -
  WHL51_RS05935 - 1162800..1162979 (+) 180 WP_003224549.1 YjzC family protein -
  WHL51_RS05940 - 1163025..1163210 (-) 186 WP_003224551.1 YjzD family protein -
  WHL51_RS05945 - 1163461..1164195 (+) 735 WP_003224553.1 hypothetical protein -
  WHL51_RS05950 - 1164279..1164836 (+) 558 WP_003224555.1 hypothetical protein -
  WHL51_RS05955 med 1164927..1165880 (+) 954 WP_003224557.1 transcriptional regulator Med Regulator
  WHL51_RS05960 comZ 1165895..1166086 (+) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  WHL51_RS05965 - 1166116..1166343 (-) 228 WP_072183380.1 hypothetical protein -
  WHL51_RS05970 fabH 1166509..1167447 (+) 939 WP_003224562.1 beta-ketoacyl-ACP synthase III -
  WHL51_RS05975 fabF 1167472..1168713 (+) 1242 WP_003224564.1 beta-ketoacyl-ACP synthase II -
  WHL51_RS05980 - 1168789..1169574 (+) 786 WP_003224566.1 DUF2268 domain-containing protein -
  WHL51_RS05985 appD 1169765..1170751 (+) 987 WP_003224568.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35322.88 Da        Isoelectric Point: 4.6608

>NTDB_id=950412 WHL51_RS05955 WP_003224557.1 1164927..1165880(+) (med) [Bacillus spizizenii str. W23]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTDEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVSEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHLSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLKTGVVEMGTFSPLVDKDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=950412 WHL51_RS05955 WP_003224557.1 1164927..1165880(+) (med) [Bacillus spizizenii str. W23]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTAAGCGGTTGTGGACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCAAAATACAATGTGGATGTCTACTATAAAGAAGGCGTTAAAACAGATGAAGATATTATAAATGCAATTGAGGAT
TTTCATAAGCGGGGTGTTAATCTTCTCTATGGCCATGGGAGTGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAA
TGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAG
CCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGGATATAGAAGTCAACACAAAATATACGGATCATTG
GGATGATGATACGACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCTGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGCCTTTATGCCATCGGTTACGTCACAGATCAATCGGACCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCTTATGAAATCATCGCTGAGCAATTCAACAAAGG
CACCCTTGAAGGCGGCGATCATTACTACGACCTGAAAACGGGGGTTGTTGAAATGGGAACATTCAGCCCGCTTGTCGATA
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACGTACAACAAAACAGGCGAACTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

98.423

100

0.984