Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   WHL51_RS05525 Genome accession   NZ_CP148102
Coordinates   1079075..1079653 (+) Length   192 a.a.
NCBI ID   WP_003224368.1    Uniprot ID   -
Organism   Bacillus spizizenii str. W23     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1074075..1084653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL51_RS05500 - 1074588..1075103 (-) 516 WP_371864110.1 methyl-accepting chemotaxis protein -
  WHL51_RS05505 hemAT 1075392..1075769 (-) 378 Protein_1032 heme-based aerotactic transducer HemAT -
  WHL51_RS05510 - 1076023..1077552 (-) 1530 WP_003224362.1 FAD-dependent oxidoreductase -
  WHL51_RS05515 - 1077664..1078521 (+) 858 WP_003224364.1 SDR family oxidoreductase -
  WHL51_RS05520 - 1078549..1078782 (-) 234 WP_003224366.1 IDEAL domain-containing protein -
  WHL51_RS05525 comK 1079075..1079653 (+) 579 WP_003224368.1 competence transcription factor ComK Regulator
  WHL51_RS05530 - 1079696..1080595 (-) 900 WP_003224369.1 SDR family oxidoreductase -
  WHL51_RS05535 - 1080812..1081081 (+) 270 WP_003224373.1 excalibur calcium-binding domain-containing protein -
  WHL51_RS05540 - 1081124..1082593 (-) 1470 WP_003224375.1 sodium:solute symporter -
  WHL51_RS05545 - 1082590..1082790 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  WHL51_RS05550 - 1083016..1083378 (-) 363 WP_003224380.1 hypothetical protein -
  WHL51_RS05555 - 1083531..1084154 (+) 624 WP_032727224.1 TVP38/TMEM64 family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22511.83 Da        Isoelectric Point: 8.1154

>NTDB_id=950409 WHL51_RS05525 WP_003224368.1 1079075..1079653(+) (comK) [Bacillus spizizenii str. W23]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVRMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKPTEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIEH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=950409 WHL51_RS05525 WP_003224368.1 1079075..1079653(+) (comK) [Bacillus spizizenii str. W23]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATCGA
CGGCAAAATTTGTTCCAAAATTATTGAAAAAGACTGCGTGTTTTACGTCAGGATGAAACCGCTGCAAATTGTCGACAGAA
GCTGCCGTTTTTTCGGATCAAGCTATGCGGGAAGAAAAGCTGGAACTTATGAAGTAACAAAAATTTCACACAAACCGCCG
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTGAAAGAATTCAAACCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGTTGC
CGATCTCCTATAATTCGTTCGAGAATCAGGTATACCGGACAGCATGGCTAAGAACTAAATTCCAAGATAGAATCGAACAC
CGCGTGCCGAAACGGCAGGAATTTATGCTGTATCCGAAGGAAGAGCGTACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

98.438

100

0.984