Detailed information NTG0950393

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACHP5P_RS04920
• Genome accession: NZ_CP172145
• Coordinates: 1016526..1017518 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain GF66.2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1011526..1022518

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACHP5P_RS04890 (ACHP5P_04890)	ispD	1011587..1012297 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACHP5P_RS04895 (ACHP5P_04895)	ispF	1012297..1012776 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACHP5P_RS04900 (ACHP5P_04900)	truD	1012773..1013822 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ACHP5P_RS04905 (ACHP5P_04905)	surE	1013803..1014564 (+)	762	WP_032254949.1	5'/3'-nucleotidase SurE	-
ACHP5P_RS04910 (ACHP5P_04910)	pcm	1014558..1015184 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACHP5P_RS04915 (ACHP5P_04915)	nlpD	1015369..1016463 (+)	1095	WP_315970779.1	murein hydrolase activator NlpD	-
ACHP5P_RS04920 (ACHP5P_04920)	rpoS	1016526..1017518 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACHP5P_RS04925 (ACHP5P_04925)	ygbN	1017612..1018976 (-)	1365	WP_086623631.1	GntP family transporter	-
ACHP5P_RS04930 (ACHP5P_04930)	ygbM	1019065..1019841 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
ACHP5P_RS04935 (ACHP5P_04935)	ygbL	1019846..1020484 (-)	639	WP_001278994.1	aldolase	-
ACHP5P_RS04940 (ACHP5P_04940)	otnK	1020481..1021743 (-)	1263	WP_000590404.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=950393 ACHP5P_RS04920 WP_000081550.1 1016526..1017518(+) (rpoS) [Escherichia coli strain GF66.2]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=950393 ACHP5P_RS04920 WP_000081550.1 1016526..1017518(+) (rpoS) [Escherichia coli strain GF66.2]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715