Detailed information NTG0950360

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACHP5Q_RS20100
• Genome accession: NZ_CP172140
• Coordinates: 4142853..4143845 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain GF130
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4137853..4148845

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACHP5Q_RS20070 (ACHP5Q_20070)	ispD	4137914..4138624 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACHP5Q_RS20075 (ACHP5Q_20075)	ispF	4138624..4139103 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACHP5Q_RS20080 (ACHP5Q_20080)	truD	4139100..4140149 (+)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
ACHP5Q_RS20085 (ACHP5Q_20085)	surE	4140130..4140891 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACHP5Q_RS20090 (ACHP5Q_20090)	pcm	4140885..4141511 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACHP5Q_RS20095 (ACHP5Q_20095)	nlpD	4141696..4142790 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ACHP5Q_RS20100 (ACHP5Q_20100)	rpoS	4142853..4143845 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACHP5Q_RS20105 (ACHP5Q_20105)	-	4144016..4144567 (-)	552	WP_001179443.1	flavodoxin family protein	-
ACHP5Q_RS20110 (ACHP5Q_20110)	-	4144792..4145836 (+)	1045	Protein_3927	MBL fold metallo-hydrolase	-
ACHP5Q_RS20115 (ACHP5Q_20115)	ygbN	4145979..4147343 (-)	1365	WP_000104433.1	GntP family transporter	-
ACHP5Q_RS20120 (ACHP5Q_20120)	ygbM	4147432..4148208 (-)	777	WP_001136913.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=950360 ACHP5Q_RS20100 WP_000081550.1 4142853..4143845(+) (rpoS) [Escherichia coli strain GF130]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=950360 ACHP5Q_RS20100 WP_000081550.1 4142853..4143845(+) (rpoS) [Escherichia coli strain GF130]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715