Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACHP5Q_RS14645 Genome accession   NZ_CP172140
Coordinates   3009480..3010472 (-) Length   330 a.a.
NCBI ID   WP_000224470.1    Uniprot ID   P0ACQ1
Organism   Escherichia coli strain GF130     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3004480..3015472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHP5Q_RS14635 (ACHP5Q_14635) yieP 3007372..3008064 (+) 693 WP_001131161.1 FadR/GntR family transcriptional regulator -
  ACHP5Q_RS14640 (ACHP5Q_14640) mdtD 3008087..3009514 (+) 1428 WP_097752033.1 multidrug transporter subunit MdtD -
  ACHP5Q_RS14645 (ACHP5Q_14645) cytR 3009480..3010472 (-) 993 WP_000224470.1 ribose operon transcriptional repressor RbsR Regulator
  ACHP5Q_RS14650 (ACHP5Q_14650) rbsK 3010476..3011405 (-) 930 WP_049595516.1 ribokinase -
  ACHP5Q_RS14655 (ACHP5Q_14655) rbsB 3011531..3012421 (-) 891 WP_001297966.1 ribose ABC transporter substrate-binding protein RbsB -
  ACHP5Q_RS14660 (ACHP5Q_14660) rbsC 3012446..3013411 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  ACHP5Q_RS14665 (ACHP5Q_14665) rbsA 3013416..3014921 (-) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  ACHP5Q_RS14670 (ACHP5Q_14670) rbsD 3014929..3015348 (-) 420 WP_001314250.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36611.90 Da        Isoelectric Point: 5.2141

>NTDB_id=950334 ACHP5Q_RS14645 WP_000224470.1 3009480..3010472(-) (cytR) [Escherichia coli strain GF130]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=950334 ACHP5Q_RS14645 WP_000224470.1 3009480..3010472(-) (cytR) [Escherichia coli strain GF130]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATTACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAACGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACCGTGATGATGGACTGGGCACCGTTCGATGGCGATAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCTGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACAACTATACACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTACAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGTGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364