Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   ACHP5R_RS19200 Genome accession   NZ_CP172134
Coordinates   3937225..3938400 (+) Length   391 a.a.
NCBI ID   WP_104274681.1    Uniprot ID   -
Organism   Escherichia coli strain GF131     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 3932225..3943400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHP5R_RS19185 (ACHP5R_19185) - 3932740..3934416 (+) 1677 WP_137514307.1 polysaccharide biosynthesis/export family protein -
  ACHP5R_RS19190 (ACHP5R_19190) kdsB 3934426..3935166 (+) 741 WP_104274679.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACHP5R_RS19195 (ACHP5R_19195) - 3935163..3937190 (+) 2028 WP_104274680.1 capsular polysaccharide biosynthesis protein -
  ACHP5R_RS19200 (ACHP5R_19200) kpsS 3937225..3938400 (+) 1176 WP_104274681.1 capsule biosynthesis protein Regulator
  ACHP5R_RS19205 (ACHP5R_19205) - 3938917..3940449 (-) 1533 WP_395760353.1 capsular biosynthesis protein -
  ACHP5R_RS19210 (ACHP5R_19210) - 3940450..3941385 (-) 936 WP_001590685.1 glycosyltransferase -
  ACHP5R_RS19215 (ACHP5R_19215) - 3941427..3942098 (-) 672 WP_001590686.1 ABC transporter ATP-binding protein -
  ACHP5R_RS19220 (ACHP5R_19220) - 3942095..3942871 (-) 777 WP_000124294.1 ABC transporter permease -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 46653.91 Da        Isoelectric Point: 10.1404

>NTDB_id=950260 ACHP5R_RS19200 WP_104274681.1 3937225..3938400(+) (kpsS) [Escherichia coli strain GF131]
MQGNALTVLLSGKKYLLLQGPMGPFFNNVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEYPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNGVYYSK

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=950260 ACHP5R_RS19200 WP_104274681.1 3937225..3938400(+) (kpsS) [Escherichia coli strain GF131]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TAACGTCGCCGAATGGTTAGAGTCATTAGGCCGTAACGCTGTGAACGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGTATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTAAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTACCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTGCCGAGGTTAATGAACGAGTTGGATCAACGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGTTGAGTAAGG
AATATGGCTTAGGGGAGCGAGTCATTTATGTGCACGATCTCCCAATGCCGGAATTATTACGCCACGCAAAAGCGGTGGTG
ACAATTAACAGTACGGCGGGGATATCTGCGCTGATTCACAACAAACCACTCAAGGTGATGGGCAATGCCCTGTACGACAT
CAAGGGATTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGTGGGTATTTATTGGTTAAGACGCAGGTTAATGGGGTTTATTACTCTAAATAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

99.488

0.396