Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   WDR08_RS18120 Genome accession   NZ_CP148035
Coordinates   3808633..3809190 (-) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   A0A6N0KGD7
Organism   Pseudomonas aeruginosa strain S1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3803633..3814190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDR08_RS18105 (WDR08_18105) pilY1 3803725..3807216 (-) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -
  WDR08_RS18110 (WDR08_18110) pilX 3807228..3807815 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  WDR08_RS18115 (WDR08_18115) pilW 3807812..3808636 (-) 825 WP_023114841.1 type 4a pilus minor pilin PilW -
  WDR08_RS18120 (WDR08_18120) pilV 3808633..3809190 (-) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  WDR08_RS18125 (WDR08_18125) - 3809181..3809687 (-) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  WDR08_RS18130 (WDR08_18130) - 3809793..3810302 (-) 510 WP_023088572.1 Tfp pilus assembly protein FimT/FimU -
  WDR08_RS18135 (WDR08_18135) thiO 3810437..3811531 (+) 1095 WP_191519341.1 glycine oxidase ThiO -
  WDR08_RS18140 (WDR08_18140) pilR 3811577..3812914 (-) 1338 WP_003110427.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=950172 WDR08_RS18120 WP_003094697.1 3808633..3809190(-) (pilV) [Pseudomonas aeruginosa strain S1]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=950172 WDR08_RS18120 WP_003094697.1 3808633..3809190(-) (pilV) [Pseudomonas aeruginosa strain S1]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAAGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACATCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KGD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978