Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACHP5S_RS16290 Genome accession   NZ_CP172127
Coordinates   3343963..3344955 (-) Length   330 a.a.
NCBI ID   WP_000224462.1    Uniprot ID   -
Organism   Escherichia coli strain GF43     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3338963..3349955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHP5S_RS16280 (ACHP5S_16280) yieP 3341855..3342547 (+) 693 WP_096984440.1 FadR/GntR family transcriptional regulator -
  ACHP5S_RS16285 (ACHP5S_16285) mdtD 3342570..3343997 (+) 1428 WP_001280852.1 multidrug transporter subunit MdtD -
  ACHP5S_RS16290 (ACHP5S_16290) cytR 3343963..3344955 (-) 993 WP_000224462.1 ribose operon transcriptional repressor RbsR Regulator
  ACHP5S_RS16295 (ACHP5S_16295) rbsK 3344959..3345888 (-) 930 WP_096984441.1 ribokinase -
  ACHP5S_RS16300 (ACHP5S_16300) rbsB 3346014..3346904 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  ACHP5S_RS16305 (ACHP5S_16305) rbsC 3346929..3347894 (-) 966 WP_052929085.1 ribose ABC transporter permease -
  ACHP5S_RS16310 (ACHP5S_16310) rbsA 3347899..3349404 (-) 1506 WP_000387771.1 ribose ABC transporter ATP-binding protein RbsA -
  ACHP5S_RS16315 (ACHP5S_16315) rbsD 3349412..3349831 (-) 420 WP_001318146.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36637.99 Da        Isoelectric Point: 5.2141

>NTDB_id=950164 ACHP5S_RS16290 WP_000224462.1 3343963..3344955(-) (cytR) [Escherichia coli strain GF43]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLLHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=950164 ACHP5S_RS16290 WP_000224462.1 3343963..3344955(-) (cytR) [Escherichia coli strain GF43]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATACAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCACGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGTTATTACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGCTGTATCAGGCAGAGTTACAAGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTAGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAACCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364