Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACHP5S_RS15320 Genome accession   NZ_CP172127
Coordinates   3145580..3146605 (+) Length   341 a.a.
NCBI ID   WP_096983844.1    Uniprot ID   -
Organism   Escherichia coli strain GF43     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3140580..3151605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHP5S_RS15310 (ACHP5S_15310) rpmE 3142811..3143023 (-) 213 WP_000710769.1 50S ribosomal protein L31 -
  ACHP5S_RS15315 (ACHP5S_15315) priA 3143226..3145424 (+) 2199 WP_096983843.1 primosomal protein N' Machinery gene
  ACHP5S_RS15320 (ACHP5S_15320) cytR 3145580..3146605 (+) 1026 WP_096983844.1 DNA-binding transcriptional regulator CytR Regulator
  ACHP5S_RS15325 (ACHP5S_15325) ftsN 3146697..3147656 (+) 960 WP_071593558.1 cell division protein FtsN -
  ACHP5S_RS15330 (ACHP5S_15330) hslV 3147749..3148279 (+) 531 WP_000208242.1 ATP-dependent protease subunit HslV -
  ACHP5S_RS15335 (ACHP5S_15335) hslU 3148289..3149620 (+) 1332 WP_001293344.1 HslU--HslV peptidase ATPase subunit -
  ACHP5S_RS15340 (ACHP5S_15340) menA 3149687..3150613 (+) 927 WP_000139496.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  ACHP5S_RS15345 (ACHP5S_15345) rraA 3150706..3151191 (+) 486 WP_000872908.1 ribonuclease E activity regulator RraA -
  ACHP5S_RS15350 (ACHP5S_15350) zapB 3151276..3151521 (-) 246 WP_001296623.1 septal ring assembly protein ZapB -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37805.76 Da        Isoelectric Point: 6.3838

>NTDB_id=950156 ACHP5S_RS15320 WP_096983844.1 3145580..3146605(+) (cytR) [Escherichia coli strain GF43]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPDEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=950156 ACHP5S_RS15320 WP_096983844.1 3145580..3146605(+) (cytR) [Escherichia coli strain GF43]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGATGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGTGACTTCACCTTCGAAGCCGGAAGCAAAGCAATGCAACAACTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-337)

Bacterial regulatory proteins, lacI family (LacI)

(11-56)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

64.478

98.24

0.633
  cytR Vibrio cholerae C6706

65.443

95.894

0.628