Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AAA982_RS05625 Genome accession   NZ_AP028601
Coordinates   1103469..1105136 (-) Length   555 a.a.
NCBI ID   WP_338168237.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PF1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1098469..1110136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAA982_RS05595 - 1098798..1099599 (-) 802 Protein_1105 IS5 family transposase -
  AAA982_RS05600 (TKY113292_10960) - 1099607..1099909 (-) 303 WP_130894609.1 PTS sugar transporter subunit IIB -
  AAA982_RS05605 (TKY113292_10970) - 1099947..1100423 (-) 477 Protein_1107 PTS sugar transporter subunit IIA -
  AAA982_RS05610 (TKY113292_10980) - 1100604..1100756 (+) 153 WP_000693359.1 hypothetical protein -
  AAA982_RS05615 (TKY113292_10990) lepA 1100837..1102660 (-) 1824 WP_001047216.1 translation elongation factor 4 -
  AAA982_RS05620 (TKY113292_11000) - 1102739..1103467 (-) 729 WP_137996324.1 metallophosphoesterase family protein -
  AAA982_RS05625 (TKY113292_11010) recN 1103469..1105136 (-) 1668 WP_338168237.1 DNA repair protein RecN Machinery gene
  AAA982_RS05630 (TKY113292_11020) - 1105143..1105574 (-) 432 WP_001034415.1 arginine repressor -
  AAA982_RS05635 (TKY113292_11030) - 1105567..1106382 (-) 816 WP_338168238.1 TlyA family RNA methyltransferase -
  AAA982_RS05640 (TKY113292_11040) - 1106375..1107250 (-) 876 WP_338168239.1 polyprenyl synthetase family protein -
  AAA982_RS05645 (TKY113292_11050) - 1107247..1107459 (-) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  AAA982_RS05650 (TKY113292_11060) xseA 1107437..1108777 (-) 1341 WP_000417464.1 exodeoxyribonuclease VII large subunit -
  AAA982_RS05655 (TKY113292_11070) udk 1108905..1109543 (-) 639 WP_001181378.1 uridine kinase -
  AAA982_RS05660 (TKY113292_11080) - 1109651..1109953 (-) 303 WP_000985089.1 bacteriocin immunity protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62772.19 Da        Isoelectric Point: 4.6769

>NTDB_id=95006 AAA982_RS05625 WP_338168237.1 1103469..1105136(-) (recN) [Streptococcus pneumoniae strain PF1]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENHLNLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNEMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=95006 AAA982_RS05625 WP_338168237.1 1103469..1105136(-) (recN) [Streptococcus pneumoniae strain PF1]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGCCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAGCTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGCTCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCTATGAATGACATGGAAAGTGTCGAAGAGTATGATCCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTGATGCAGGTTGAGAATCATTTGAACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATGAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGCATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACGGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.958

100

0.44

Multiple sequence alignment