Detailed information NTG0950055

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACHL9R_RS05340
• Genome accession: NZ_CP172111
• Coordinates: 1088734..1089726 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MJ-T
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1083734..1094726

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACHL9R_RS05310	ispD	1083795..1084505 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACHL9R_RS05315	ispF	1084505..1084984 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACHL9R_RS05320	truD	1084981..1086030 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ACHL9R_RS05325	surE	1086011..1086772 (+)	762	WP_057697505.1	5'/3'-nucleotidase SurE	-
ACHL9R_RS05330	pcm	1086766..1087392 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACHL9R_RS05335	nlpD	1087577..1088671 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ACHL9R_RS05340	rpoS	1088734..1089726 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACHL9R_RS05345	-	1089847..1090254 (-)	408	WP_001208072.1	MarR family winged helix-turn-helix transcriptional regulator	-
ACHL9R_RS05350	-	1090401..1090994 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
ACHL9R_RS05355	-	1090994..1092421 (+)	1428	WP_021578698.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
ACHL9R_RS05360	-	1092432..1092668 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
ACHL9R_RS05365	ygbN	1092707..1094071 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=950055 ACHL9R_RS05340 WP_000081550.1 1088734..1089726(+) (rpoS) [Escherichia coli strain MJ-T]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=950055 ACHL9R_RS05340 WP_000081550.1 1088734..1089726(+) (rpoS) [Escherichia coli strain MJ-T]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715