Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   AAA982_RS05480 Genome accession   NZ_AP028601
Coordinates   1076547..1077011 (-) Length   154 a.a.
NCBI ID   WP_001135783.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PF1     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1071547..1082011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAA982_RS05460 (TKY113292_10680) - 1072498..1073466 (-) 969 WP_317649426.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  AAA982_RS05465 (TKY113292_10690) pdrM 1073620..1074981 (-) 1362 WP_000278534.1 sodium-coupled multidrug efflux MATE transporter PdrM -
  AAA982_RS05470 (TKY113292_10700) - 1074992..1075252 (-) 261 WP_001105925.1 hypothetical protein -
  AAA982_RS05475 (TKY113292_10710) - 1075266..1076534 (-) 1269 WP_338168235.1 dihydroorotase -
  AAA982_RS05480 (TKY113292_10720) mutX 1076547..1077011 (-) 465 WP_001135783.1 8-oxo-dGTP diphosphatase Machinery gene
  AAA982_RS05485 (TKY113292_10730) - 1077021..1077674 (-) 654 WP_000401326.1 uracil-DNA glycosylase -
  AAA982_RS05490 (TKY113292_10740) - 1077810..1078457 (-) 648 WP_001824648.1 hypothetical protein -
  AAA982_RS05495 (TKY113292_10750) - 1078471..1079184 (-) 714 WP_000499433.1 YjjG family noncanonical pyrimidine nucleotidase -
  AAA982_RS05500 (TKY113292_10760) - 1079593..1079811 (-) 219 Protein_1086 PTS mannose family transporter subunit IIA -
  AAA982_RS05505 - 1079811..1079885 (-) 75 Protein_1087 dihydroxyacetone kinase subunit L -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17840.21 Da        Isoelectric Point: 4.2287

>NTDB_id=95004 AAA982_RS05480 WP_001135783.1 1076547..1077011(-) (mutX) [Streptococcus pneumoniae strain PF1]
MPQLATICYIDNGKELLMLHRNKKPNDVHEGKWIGVGGKLERGETPQECAVREILEETGLKAKPVLKGVITFPEFTPDLD
WYTYVFKVTEFEGDLIDCNEGTLEWVPYDEVLSKPTWEGDHTFVEWLLEDKPFFSAKFVYDGDKLLDTQVDFYE

Nucleotide


Download         Length: 465 bp        

>NTDB_id=95004 AAA982_RS05480 WP_001135783.1 1076547..1077011(-) (mutX) [Streptococcus pneumoniae strain PF1]
ATGCCTCAGTTAGCGACGATTTGCTACATTGATAATGGGAAAGAACTGCTCATGCTCCATCGTAATAAGAAACCCAATGA
TGTCCATGAAGGGAAATGGATTGGTGTGGGTGGTAAGCTAGAGAGAGGAGAAACGCCCCAGGAATGCGCGGTGCGTGAAA
TCCTTGAAGAAACAGGGCTCAAAGCCAAGCCAGTTCTAAAAGGTGTCATCACTTTTCCTGAATTTACACCAGATTTAGAC
TGGTACACCTATGTTTTTAAGGTGACGGAGTTTGAGGGCGACTTGATTGACTGCAATGAGGGGACGCTAGAATGGGTTCC
CTATGATGAGGTTTTGAGCAAGCCGACTTGGGAAGGTGACCACACCTTTGTTGAGTGGCTTTTAGAGGATAAACCCTTCT
TTTCAGCCAAGTTTGTTTATGATGGGGATAAATTGTTGGATACCCAAGTTGATTTCTATGAATAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(2-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

99.351

100

0.994

Multiple sequence alignment