Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   AAA982_RS05435 Genome accession   NZ_AP028601
Coordinates   1066284..1067354 (+) Length   356 a.a.
NCBI ID   WP_000817879.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PF1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1061284..1072354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAA982_RS05420 (TKY113292_10600) ylqF 1062537..1063388 (+) 852 WP_000201299.1 ribosome biogenesis GTPase YlqF -
  AAA982_RS05425 (TKY113292_10610) - 1063375..1064154 (+) 780 WP_000201141.1 ribonuclease HII -
  AAA982_RS05430 (TKY113292_10620) - 1064170..1065720 (+) 1551 WP_000392560.1 ClC family H(+)/Cl(-) exchange transporter -
  AAA982_RS05435 (TKY113292_10630) xerS 1066284..1067354 (+) 1071 WP_000817879.1 tyrosine recombinase XerS Machinery gene
  AAA982_RS05440 (TKY113292_10640) - 1067427..1068416 (-) 990 WP_000873987.1 lipoate--protein ligase -
  AAA982_RS05445 (TKY113292_10650) lpdA 1068480..1070183 (-) 1704 WP_050079423.1 dihydrolipoyl dehydrogenase -
  AAA982_RS05450 (TKY113292_10660) - 1070229..1071272 (-) 1044 WP_000752697.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41086.15 Da        Isoelectric Point: 9.6949

>NTDB_id=95003 AAA982_RS05435 WP_000817879.1 1066284..1067354(+) (xerS) [Streptococcus pneumoniae strain PF1]
MKREILLERIDKLKQLMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETAGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVSDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=95003 AAA982_RS05435 WP_000817879.1 1066284..1067354(+) (xerS) [Streptococcus pneumoniae strain PF1]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAACTCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAGCTGGCTGTGCCCTACAGTTTTACAACCCTGTACGAATACCTTAAGGAATATGACCGATTTTTCAGCTGGGTTTTGG
AGTCTGGTATTTCAAACGCTGATAAAATATCCGATATTCCTTTATCAGTTTTGGAAAATATGTCTAAGAAAGACATGGAA
TCCTTTATCCTTTATCTACGTGAACGTCCCTTGCTGAATGCTAATACAACAAAACAAGGTGTTTCACAGACAACTATCAA
TCGAACCTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACCGAGGAGGTTGAAAATGATCAGGGGGAACCTTATTTCT
ATCGTAATGTAATGAAAAAAGTTTCAACCAAGAAAAAGAAAGAAACCCTTGCTGCCAGAGCTGAAAATATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGCAGGTTTTCTAACTTATATCGATCAAGAGCACCCACAACAGCTTTCAAATCGAGCTCT
CTCATCATTCAACAAAAATAAAGAACGAGATTTAGCCATTATTGCCCTTCTCTTGGCATCTGGTGTTCGCTTATCTGAAG
CTGTTAATCTAGATCTAAGAGATCTCAATCTAAAAATGATGGTTATTGATGTTACTCGAAAAGGTGGCAAACGTGACTCA
GTCAATGTCGCTGCTTTTGCTAAACCTTATTTAGAGAATTATCTGGCCATTCGGAATCAACGCTATAAAACGGAAAAAAC
AGATACAGCCCTTTTTTTAACTCTCTACAGAGGTGTTCCTAATCGTATCGATGCTTCTAGCGTTGAGAAAATGGTTGCTA
AATACTCAGAGGATTTTAAAGTGCGTGTAACACCCCATAAACTGCGCCATACACTAGCAACTAGGCTCTATGATGCGACT
AAATCACAAGTTTTAGTCAGTCACCAACTAGGACATGCCAGCACACAAGTCACTGACCTCTATACCCATATTGTTAGTGA
TGAACAAAAGAATGCTCTGGATAGTTTATGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(188-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(71-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

99.438

100

0.994