Detailed information NTG0950023

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: ACHOXR_RS22035
• Genome accession: NZ_CP172108
• Coordinates: 4487349..4488374 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain QL57EC
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4482349..4493374

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACHOXR_RS22025 (ACHOXR_22025)	rpmE	4484580..4484792 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
ACHOXR_RS22030 (ACHOXR_22030)	priA	4484995..4487193 (+)	2199	WP_001300388.1	primosomal protein N'	Machinery gene
ACHOXR_RS22035 (ACHOXR_22035)	cytR	4487349..4488374 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
ACHOXR_RS22040 (ACHOXR_22040)	ftsN	4488466..4489425 (+)	960	WP_000068828.1	cell division protein FtsN	-
ACHOXR_RS22045 (ACHOXR_22045)	hslV	4489518..4490048 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
ACHOXR_RS22050 (ACHOXR_22050)	hslU	4490058..4491389 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
ACHOXR_RS22055 (ACHOXR_22055)	menA	4491456..4492382 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
ACHOXR_RS22060 (ACHOXR_22060)	rraA	4492475..4492960 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
ACHOXR_RS22065 (ACHOXR_22065)	zapB	4493045..4493290 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=950023 ACHOXR_RS22035 WP_000644904.1 4487349..4488374(+) (cytR) [Escherichia coli strain QL57EC]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=950023 ACHOXR_RS22035 WP_000644904.1 4487349..4488374(+) (cytR) [Escherichia coli strain QL57EC]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628