Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   WGQ51_RS06445 Genome accession   NZ_CP148000
Coordinates   1216187..1217107 (-) Length   306 a.a.
NCBI ID   WP_263668370.1    Uniprot ID   -
Organism   Campylobacter lari strain NPRC(S) 01.13900     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1211187..1222107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WGQ51_RS06425 (WGQ51_06425) cysK 1212159..1213061 (-) 903 WP_263668366.1 cysteine synthase A -
  WGQ51_RS06430 (WGQ51_06430) - 1213157..1213459 (-) 303 WP_012661929.1 HU family DNA-binding protein -
  WGQ51_RS06435 (WGQ51_06435) - 1213551..1214678 (-) 1128 WP_263668367.1 hypothetical protein -
  WGQ51_RS06440 (WGQ51_06440) - 1214687..1216186 (-) 1500 WP_263668369.1 MBOAT family O-acyltransferase -
  WGQ51_RS06445 (WGQ51_06445) waaF 1216187..1217107 (-) 921 WP_263668370.1 lipopolysaccharide heptosyltransferase II Regulator
  WGQ51_RS06450 (WGQ51_06450) - 1217154..1217960 (+) 807 WP_263668371.1 glycosyltransferase family 2 protein -
  WGQ51_RS06455 (WGQ51_06455) - 1217955..1219889 (-) 1935 WP_263668372.1 motility associated factor glycosyltransferase family protein -
  WGQ51_RS06460 (WGQ51_06460) - 1219890..1220654 (-) 765 WP_220555188.1 oxidoreductase -
  WGQ51_RS06465 (WGQ51_06465) - 1220654..1221361 (-) 708 WP_012661933.1 acylneuraminate cytidylyltransferase family protein -

Sequence

Protein


Download         Length: 306 a.a.        Molecular weight: 34856.16 Da        Isoelectric Point: 10.3757

>NTDB_id=949920 WGQ51_RS06445 WP_263668370.1 1216187..1217107(-) (waaF) [Campylobacter lari strain NPRC(S) 01.13900]
MKIFINLPTWLGDAVMASAAIYAIKEKFNDAEFLFYGSFVSTQVFKNFQNCKVIVENKKQRYSQIFKLRKELKEFDLAIS
FRSAFSSKLILHFIKAKQRFFFDKNQNKNNHQVLKYLKFIEQILDFKANSNSLKLPIKVKSTKKILGINAGAHYGSAKRW
EASYFARVAKEFSHTHKILIFGVESEKKICDEIENLLLNDGIKAKNLCGKTSIFTLCKNISMLDLLITNDSGPMHIGAVY
GVKTVAIFGSTKFSQTSPWQKNAKIAHLNLACMPCMQKVCPLKHHKCMKDLKPEVVINLAKNLLGV

Nucleotide


Download         Length: 921 bp        

>NTDB_id=949920 WGQ51_RS06445 WP_263668370.1 1216187..1217107(-) (waaF) [Campylobacter lari strain NPRC(S) 01.13900]
ATGAAAATTTTTATAAATCTACCTACTTGGCTTGGTGATGCGGTGATGGCAAGTGCTGCGATATATGCTATAAAAGAAAA
ATTTAACGATGCTGAATTTTTATTTTATGGTTCTTTTGTAAGCACACAAGTTTTTAAAAATTTTCAAAATTGTAAAGTCA
TAGTAGAAAATAAAAAACAAAGATATTCTCAAATTTTTAAACTCAGAAAAGAACTTAAAGAATTTGATCTAGCCATTAGT
TTTCGCTCAGCCTTTTCTAGCAAGTTAATTTTGCATTTTATCAAGGCAAAACAAAGATTTTTTTTTGATAAAAATCAAAA
TAAAAACAATCATCAAGTTTTAAAATATTTAAAATTTATAGAGCAAATTTTAGATTTTAAAGCCAATTCAAATTCGTTAA
AACTTCCTATAAAAGTAAAATCTACTAAAAAAATTCTAGGCATAAATGCTGGGGCTCATTATGGAAGTGCAAAAAGATGG
GAGGCAAGCTATTTTGCAAGGGTTGCAAAAGAATTTAGCCATACTCATAAAATTTTAATTTTTGGCGTAGAAAGTGAAAA
AAAAATTTGTGATGAAATAGAAAATTTATTATTAAATGATGGTATAAAAGCTAAGAATTTATGTGGAAAAACTAGTATTT
TTACTCTTTGTAAAAATATATCTATGCTTGATTTACTCATCACAAACGATAGTGGTCCTATGCATATAGGCGCAGTTTAT
GGAGTGAAAACGGTGGCTATTTTTGGCTCGACTAAATTTAGTCAAACATCGCCTTGGCAAAAAAATGCTAAAATAGCACA
TTTAAATTTAGCTTGTATGCCTTGTATGCAAAAGGTCTGCCCTTTAAAACACCACAAATGCATGAAAGATTTAAAGCCTG
AAGTGGTAATAAATCTAGCAAAAAATCTTTTAGGAGTATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(66-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.605

100

0.673