Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   ACHWYH_RS05935 Genome accession   NZ_CP172084
Coordinates   1191874..1194066 (-) Length   730 a.a.
NCBI ID   WP_112103469.1    Uniprot ID   -
Organism   Haemophilus influenzae strain GA81666     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1186874..1199066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHWYH_RS05910 relA 1187169..1189400 (+) 2232 WP_112103472.1 GTP diphosphokinase -
  ACHWYH_RS05915 - 1189415..1189771 (+) 357 WP_005632174.1 diacylglycerol kinase -
  ACHWYH_RS05920 mog 1189854..1190447 (+) 594 WP_112103471.1 molybdopterin adenylyltransferase -
  ACHWYH_RS05925 glnB 1190449..1190787 (+) 339 WP_005654045.1 nitrogen regulatory protein P-II -
  ACHWYH_RS05930 - 1190787..1191833 (+) 1047 WP_112103470.1 AI-2E family transporter -
  ACHWYH_RS05935 priA 1191874..1194066 (-) 2193 WP_112103469.1 primosomal protein N' Machinery gene
  ACHWYH_RS05940 trmB 1194151..1194891 (+) 741 WP_112103468.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ACHWYH_RS05945 - 1194976..1195320 (+) 345 WP_112103467.1 YggL family protein -
  ACHWYH_RS05950 napF 1195527..1196057 (+) 531 WP_005659948.1 ferredoxin-type protein NapF -
  ACHWYH_RS05955 - 1196050..1196331 (+) 282 WP_005659946.1 chaperone NapD -
  ACHWYH_RS05960 napA 1196368..1198851 (+) 2484 WP_112103466.1 nitrate reductase catalytic subunit NapA -

Sequence

Protein


Download         Length: 730 a.a.        Molecular weight: 82224.46 Da        Isoelectric Point: 9.1528

>NTDB_id=949917 ACHWYH_RS05935 WP_112103469.1 1191874..1194066(-) (priA) [Haemophilus influenzae strain GA81666]
MKIVRVALAVPLPRLFDYLVPDDVSLQIGMRVLVPFGTQKRIAIVADFPTKSDVPEDKLKAILQPLDLVPLFTPIYWDWL
HWAANYYQAGLGDVLFQALPVKLRNGESAAKNDRTFWRITDAGKNALEQGELKRSKKQAEALQCLSETDLEKGNNDFSSA
IWSALKAKGFIEEITIKTNPLSWQQRLGNNPIVNAENRLTLNKQQALAFSQLLFHSGFNVWLLDGVTGSGKTEIYLQYIE
EILKSGKQVLVLVPEIGLTPQTVQRFKARFNVEIDVLHSNLTDTQRLYVWDRARSGQSAIVIGTRSALFTQFSNLGAIIL
DEEHDSSYKQQDSWRYHARDLAIVLAQKLNISVLMGSATPSLESINNVQNGKYQHLVLSKRAGNSTALRHFVVDLKNQNI
QNGLSKPLLERMKVHLEKGNQVLLFLNRRGFAPVLLCHECGWIAQCPHCEKPYTYHQHQNVLRCHHCGAQKTIPRQCGDC
GSTHLVTTGLGTEQLEETLKTLFPHYSVARIDRDSTARKGKLEGYLEDIQQGKSQILIGTQMLAKGHHFPNVTLVALVNV
DGALFSLDFRAEERLAQLYIQVAGRAGRADKRGEVVLQTHYPDHPLLTTLLANGYQAFAKETLQLRHSMGLPPFTFQALI
KAQARHSDLAENCLSQIADFFQSKQITGLQMLGPMPAPFSKKAGQYRWQLLLQHPSRMTLQKALREYQQAELEKNSQVRL
ILDVDPQDLS

Nucleotide


Download         Length: 2193 bp        

>NTDB_id=949917 ACHWYH_RS05935 WP_112103469.1 1191874..1194066(-) (priA) [Haemophilus influenzae strain GA81666]
ATGAAAATTGTCCGAGTGGCACTGGCTGTGCCGCTTCCTCGTTTATTTGATTATCTCGTCCCCGATGATGTTTCATTACA
AATCGGTATGCGTGTTCTTGTGCCTTTTGGTACGCAAAAACGCATCGCCATTGTGGCTGATTTTCCGACAAAATCGGACG
TGCCAGAGGATAAGCTCAAAGCCATTCTTCAACCATTAGATTTAGTCCCACTTTTTACGCCCATTTATTGGGATTGGCTT
CATTGGGCAGCAAATTATTATCAAGCGGGATTAGGCGATGTGTTATTTCAAGCCTTGCCTGTGAAATTACGCAACGGCGA
AAGTGCGGCGAAAAATGACCGCACTTTTTGGCGAATTACGGATGCGGGGAAAAATGCCCTTGAACAAGGCGAGTTAAAAC
GCTCGAAAAAGCAAGCTGAAGCCCTGCAATGCTTATCTGAAACCGATCTTGAAAAAGGCAATAATGATTTTTCTTCTGCT
ATTTGGTCAGCCTTAAAAGCCAAAGGGTTTATTGAGGAAATTACTATCAAAACAAATCCCCTAAGCTGGCAACAAAGATT
AGGCAATAACCCAATTGTCAATGCTGAAAATCGTTTAACCTTAAATAAGCAGCAAGCCTTAGCCTTCAGCCAACTGCTCT
TCCATTCTGGTTTCAATGTATGGCTGCTCGATGGCGTGACTGGTTCAGGTAAAACAGAAATTTATCTGCAGTATATTGAA
GAAATTTTAAAATCGGGTAAGCAAGTATTAGTGCTTGTACCCGAAATCGGGCTAACACCTCAAACGGTGCAACGTTTTAA
AGCACGTTTTAATGTAGAAATTGATGTACTGCATTCTAATTTAACCGATACGCAACGGCTTTATGTATGGGATCGCGCCC
GCTCTGGACAAAGTGCCATTGTGATTGGCACGAGATCGGCATTGTTCACGCAATTTTCTAATCTTGGTGCAATTATTTTA
GACGAGGAACACGATTCGTCTTACAAACAGCAAGACAGTTGGCGTTACCATGCACGAGATTTAGCAATCGTGCTTGCTCA
AAAACTGAACATTTCAGTATTAATGGGCTCCGCCACGCCAAGTTTAGAAAGTATTAATAATGTACAAAACGGCAAATACC
AACATTTAGTTTTATCAAAAAGAGCGGGAAATTCTACCGCACTTCGTCATTTCGTTGTTGATTTGAAAAATCAAAACATA
CAAAACGGGCTTTCGAAACCCTTATTAGAACGGATGAAAGTTCACCTCGAAAAAGGCAATCAAGTGTTGCTTTTCTTGAA
TCGTCGTGGCTTTGCGCCCGTATTGCTTTGCCATGAATGTGGTTGGATCGCACAATGCCCTCATTGTGAAAAACCTTATA
CCTATCATCAGCATCAAAATGTATTGCGTTGTCATCATTGTGGCGCACAAAAAACTATTCCTCGCCAATGTGGCGATTGC
GGTTCTACCCATTTAGTTACTACTGGTCTCGGCACGGAACAATTAGAAGAAACCTTGAAAACGCTATTTCCTCATTATTC
TGTAGCGCGAATCGACCGCGATAGCACGGCACGTAAAGGAAAATTGGAAGGTTATTTAGAAGATATTCAACAAGGCAAAA
GCCAAATTTTGATTGGCACACAAATGCTTGCGAAAGGACATCATTTCCCGAATGTTACTCTCGTTGCCTTAGTGAATGTA
GATGGTGCATTATTTTCACTGGATTTTCGTGCAGAAGAACGTTTAGCTCAACTTTATATTCAAGTTGCTGGACGTGCAGG
ACGTGCCGATAAACGAGGTGAAGTGGTGCTACAAACACATTATCCTGATCATCCTTTGCTTACCACTTTATTGGCAAATG
GCTACCAAGCTTTTGCAAAAGAAACCTTACAATTACGCCATTCAATGGGATTGCCGCCTTTTACTTTTCAGGCGTTAATC
AAAGCACAGGCTCGACATTCTGATCTTGCAGAAAATTGCTTAAGCCAAATTGCAGATTTTTTTCAATCGAAGCAAATTAC
GGGATTACAAATGCTTGGTCCAATGCCTGCACCGTTCAGCAAAAAAGCAGGGCAATATCGCTGGCAGTTATTATTGCAGC
ATCCGTCAAGAATGACGTTGCAAAAAGCATTGAGAGAATATCAACAAGCCGAACTTGAAAAAAACAGCCAAGTGCGGTTA
ATTTTGGATGTTGATCCGCAAGATTTATCATAA

Domains

Predicted by InterProScan.

Primosomal protein N C-terminal domain (PriA_C)

(633-726)

DEAD/DEAH box helicase (DEAD)

(204-366)

Helicase conserved C-terminal domain (Helicase_C)

(503-589)

3DNA-binding domain (3BD) (PriA_3primeBD)

(5-100)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(446-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

44.489

100

0.453