Detailed information NTG0949910

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: WGQ51_RS02005
• Genome accession: NZ_CP148000
• Coordinates: 373798..375189 (+)
• Length: 463 a.a.
• NCBI ID: WP_012661131.1
• Uniprot ID: A0A5L4XCD8
• Organism: Campylobacter lari strain NPRC(S) 01.13900
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 368798..380189

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WGQ51_RS01990 (WGQ51_01990)	-	369183..369827 (+)	645	WP_012661128.1	HAD family hydrolase	-
WGQ51_RS01995 (WGQ51_01995)	nifJ	369945..373499 (+)	3555	WP_070255998.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
WGQ51_RS02000 (WGQ51_02000)	-	373521..373826 (+)	306	WP_070266241.1	hypothetical protein	-
WGQ51_RS02005 (WGQ51_02005)	ctsD	373798..375189 (+)	1392	WP_012661131.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
WGQ51_RS02010 (WGQ51_02010)	-	375170..375499 (+)	330	WP_263668603.1	hypothetical protein	-
WGQ51_RS02015 (WGQ51_02015)	-	375492..377006 (+)	1515	WP_263668604.1	GspE/PulE family protein	-
WGQ51_RS02020 (WGQ51_02020)	-	377003..378163 (+)	1161	WP_263668605.1	type II secretion system F family protein	-
WGQ51_RS02025 (WGQ51_02025)	-	378160..378912 (-)	753	WP_012661135.1	TSUP family transporter	-
WGQ51_RS02030 (WGQ51_02030)	-	378897..379646 (-)	750	WP_012661136.1	TIGR02757 family protein	-

Sequence

Protein

• Length: 463 a.a.
• Molecular weight: 52509.34 Da
• Isoelectric Point: 7.9605

>NTDB_id=949910 WGQ51_RS02005 WP_012661131.1 373798..375189(+) (ctsD) [Campylobacter lari strain NPRC(S) 01.13900]
MKKIIFLFISILSFTNIFASQCHQRFFDISVENKTSLIEILNELGRECGFSIIIKDSLAREKLNHTQNYLHIRKMSLREI
FKLLLMENNLAYEYEKNILKIYGRQVKTFKVHYISSIREGQSITKASVDSRPKQGDYDSAKEADNLVISTDKFDFWEKIA
EEIQALLDENTTKPIINTNAGIITLNATLYELARVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQDLAFKLNG
DDNDFIINKGGVKNINLKANVETKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKN
TISNHNEVSALSKIPLFGALFQGKQNLEDISEIVFIIKPSLIRADKKVLSLKELGFEHEDDMF

Nucleotide

• Length: 1392 bp

>NTDB_id=949910 WGQ51_RS02005 WP_012661131.1 373798..375189(+) (ctsD) [Campylobacter lari strain NPRC(S) 01.13900]
ATGAAAAAAATAATATTTTTATTCATTAGTATTTTAAGTTTTACAAATATTTTTGCTTCGCAGTGTCATCAGCGCTTTTT
TGATATAAGCGTAGAAAATAAGACTTCTTTGATTGAAATTTTAAATGAACTTGGTAGAGAATGTGGATTTAGTATTATAA
TAAAAGATTCATTAGCTAGAGAAAAGTTAAATCATACTCAAAATTATTTACACATAAGAAAAATGTCTTTAAGAGAAATT
TTTAAACTTTTATTGATGGAAAATAATCTTGCTTATGAGTATGAAAAAAATATTTTAAAAATTTATGGAAGACAAGTTAA
AACTTTTAAAGTTCATTATATAAGCTCTATTAGAGAAGGGCAAAGCATTACTAAAGCTTCAGTGGATTCAAGACCTAAAC
AGGGTGATTATGATAGTGCTAAAGAAGCAGATAATTTAGTCATTAGTACAGATAAATTTGATTTTTGGGAGAAAATTGCA
GAAGAAATTCAAGCTTTACTTGATGAAAATACTACTAAGCCCATTATTAATACCAATGCGGGAATTATTACTTTAAATGC
TACTTTGTATGAGCTTGCAAGAGTTGAAAAATATCTAAAAGACTTAAATAAAAGACTTAAAAAGCAAGTTTTAATTGATG
TAAGTATAGTTGCAGTACATTTAAATAAAAGCCATTCAAGTGGGATTAACTGGCAAGATCTTGCTTTTAAACTTAATGGA
GATGATAATGATTTTATAATCAATAAAGGTGGTGTTAAAAATATTAATCTTAAAGCTAATGTTGAAACTAAGGCAATTTT
AAATTTATTACAAGAAAATGGCAAAACCACTGTACTTTCTAACCCAAAACTCATGGCACTTAATAATCAGCAAGCTATTA
TTTCCATAGGTGATACGATTAATTATCAAGTAAAAGAAAGCTCTAAGGGTACTGAAAATGGTACGACCATTAGTGAAACC
TATAATAATTATTCTATTTTTGTAGGAATTTTACTAAATATTTTGCCAGAAATTTCAGATGATCATAAAATCATGCTTAG
GATTAATCCTAGTTTGAGTGATTTTAAATATAGTGTTGATAATCATAGGCAAAATAAACCAAGAAATATAGCACCAGATA
CTATACAAAAAAAGCTTTCTACTGTAGTTGAAGTGGATGATGGGCAAACTTTAATTTTGGGTGGATTGATTAGTAAAAAT
ACGATTAGTAATCATAATGAAGTAAGTGCTTTATCTAAAATACCACTTTTTGGAGCTTTATTTCAAGGAAAGCAAAATTT
AGAAGATATTAGCGAAATAGTTTTTATTATCAAGCCAAGTTTAATAAGAGCTGATAAAAAAGTATTAAGTTTAAAAGAAT
TAGGTTTTGAACATGAAGATGATATGTTTTAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (269-443)

3D structure

• AlphaFold DB: A0A5L4XCD8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	57.051	100	0.577