Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ACHWYG_RS06520 Genome accession   NZ_CP172082
Coordinates   1298122..1298724 (+) Length   200 a.a.
NCBI ID   WP_005626527.1    Uniprot ID   A0ABY1VST8
Organism   Haemophilus influenzae strain GA54827     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1293122..1303724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHWYG_RS06505 - 1293987..1296587 (+) 2601 WP_032823987.1 penicillin-binding protein 1A -
  ACHWYG_RS06510 - 1296664..1297509 (+) 846 WP_032823988.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  ACHWYG_RS06515 - 1297662..1297991 (+) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  ACHWYG_RS06520 recR 1298122..1298724 (+) 603 WP_005626527.1 recombination mediator RecR Machinery gene
  ACHWYG_RS06525 - 1298740..1300695 (+) 1956 WP_032823989.1 DNA topoisomerase III -
  ACHWYG_RS06530 secG 1300804..1301145 (+) 342 WP_005691381.1 preprotein translocase subunit SecG -
  ACHWYG_RS06540 - 1301690..1303360 (-) 1671 WP_032823990.1 fructose-specific PTS transporter subunit EIIC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22107.23 Da        Isoelectric Point: 6.4843

>NTDB_id=949863 ACHWYG_RS06520 WP_005626527.1 1298122..1298724(+) (recR) [Haemophilus influenzae strain GA54827]
MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSGGMNLARALTEAMSKIGHCSQCRDFTEEDTCNICNNPRRQNS
GLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEM
CRQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID

Nucleotide


Download         Length: 603 bp        

>NTDB_id=949863 ACHWYG_RS06520 WP_005626527.1 1298122..1298724(+) (recR) [Haemophilus influenzae strain GA54827]
ATGCAAAGCAGCCCACTTTTAGAACACCTTATTGAAAACTTACGTTGTCTTCCAGGCGTAGGGCCTAAATCTGCACAACG
TATGGCTTATCATCTTTTACAACGTAATCGTAGCGGTGGAATGAATTTAGCTCGAGCACTCACAGAAGCTATGTCTAAAA
TTGGTCATTGTTCACAGTGTCGAGACTTTACGGAAGAAGACACTTGCAACATTTGCAATAATCCACGCCGTCAAAATTCA
GGTTTGCTTTGTGTCGTTGAAATGCCAGCTGATATTCAAGCGATTGAGCAAACGGGGCAATTTTCAGGACGTTATTTTGT
TTTAATGGGACATTTGTCTCCACTGGATGGTATTGGGCCTCGTGAAATTGGCTTAGATTTACTGCAAAAACGCTTAGTAG
AAGAATCTTTCCACGAAGTGATTCTTGCAACAAATCCAACGGTGGAAGGCGATGCTACAGCAAACTACATTGCTGAAATG
TGCCGCCAACACAATATCAAAGTGAGTCGTATCGCTCACGGTATCCCTGTCGGTGGTGAACTGGAAACTGTGGACGGCAC
AACGCTTACTCACTCTTTTCTAGGTCGTCGTCAAATCGACTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(83-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.5

0.44
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.216

99.5

0.43