Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   ACHWYG_RS05660 Genome accession   NZ_CP172082
Coordinates   1154102..1156294 (-) Length   730 a.a.
NCBI ID   WP_112103469.1    Uniprot ID   -
Organism   Haemophilus influenzae strain GA54827     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1149102..1161294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHWYG_RS05635 relA 1149397..1151628 (+) 2232 WP_118804399.1 GTP diphosphokinase -
  ACHWYG_RS05640 - 1151643..1151999 (+) 357 WP_005632174.1 diacylglycerol kinase -
  ACHWYG_RS05645 mog 1152082..1152675 (+) 594 WP_118804398.1 molybdopterin adenylyltransferase -
  ACHWYG_RS05650 glnB 1152677..1153015 (+) 339 WP_005654045.1 nitrogen regulatory protein P-II -
  ACHWYG_RS05655 - 1153015..1154061 (+) 1047 WP_112103470.1 AI-2E family transporter -
  ACHWYG_RS05660 priA 1154102..1156294 (-) 2193 WP_112103469.1 primosomal protein N' Machinery gene
  ACHWYG_RS05665 trmB 1156379..1157119 (+) 741 WP_112103468.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ACHWYG_RS05670 - 1157204..1157548 (+) 345 WP_112103467.1 YggL family protein -
  ACHWYG_RS05675 napF 1157754..1158284 (+) 531 WP_005662678.1 ferredoxin-type protein NapF -
  ACHWYG_RS05680 - 1158277..1158558 (+) 282 WP_005654036.1 chaperone NapD -
  ACHWYG_RS05685 napA 1158595..1161078 (+) 2484 WP_116938133.1 nitrate reductase catalytic subunit NapA -

Sequence

Protein


Download         Length: 730 a.a.        Molecular weight: 82224.46 Da        Isoelectric Point: 9.1528

>NTDB_id=949852 ACHWYG_RS05660 WP_112103469.1 1154102..1156294(-) (priA) [Haemophilus influenzae strain GA54827]
MKIVRVALAVPLPRLFDYLVPDDVSLQIGMRVLVPFGTQKRIAIVADFPTKSDVPEDKLKAILQPLDLVPLFTPIYWDWL
HWAANYYQAGLGDVLFQALPVKLRNGESAAKNDRTFWRITDAGKNALEQGELKRSKKQAEALQCLSETDLEKGNNDFSSA
IWSALKAKGFIEEITIKTNPLSWQQRLGNNPIVNAENRLTLNKQQALAFSQLLFHSGFNVWLLDGVTGSGKTEIYLQYIE
EILKSGKQVLVLVPEIGLTPQTVQRFKARFNVEIDVLHSNLTDTQRLYVWDRARSGQSAIVIGTRSALFTQFSNLGAIIL
DEEHDSSYKQQDSWRYHARDLAIVLAQKLNISVLMGSATPSLESINNVQNGKYQHLVLSKRAGNSTALRHFVVDLKNQNI
QNGLSKPLLERMKVHLEKGNQVLLFLNRRGFAPVLLCHECGWIAQCPHCEKPYTYHQHQNVLRCHHCGAQKTIPRQCGDC
GSTHLVTTGLGTEQLEETLKTLFPHYSVARIDRDSTARKGKLEGYLEDIQQGKSQILIGTQMLAKGHHFPNVTLVALVNV
DGALFSLDFRAEERLAQLYIQVAGRAGRADKRGEVVLQTHYPDHPLLTTLLANGYQAFAKETLQLRHSMGLPPFTFQALI
KAQARHSDLAENCLSQIADFFQSKQITGLQMLGPMPAPFSKKAGQYRWQLLLQHPSRMTLQKALREYQQAELEKNSQVRL
ILDVDPQDLS

Nucleotide


Download         Length: 2193 bp        

>NTDB_id=949852 ACHWYG_RS05660 WP_112103469.1 1154102..1156294(-) (priA) [Haemophilus influenzae strain GA54827]
ATGAAAATTGTCCGAGTGGCACTGGCTGTGCCGCTTCCTCGTTTATTTGATTATCTCGTCCCCGATGATGTTTCATTACA
AATCGGTATGCGTGTTCTTGTGCCTTTTGGTACGCAAAAACGCATCGCCATTGTGGCTGATTTTCCGACAAAATCGGACG
TGCCAGAGGATAAGCTCAAAGCCATTCTTCAACCATTAGATTTAGTCCCACTTTTTACGCCCATTTATTGGGATTGGCTT
CATTGGGCAGCAAATTATTATCAAGCGGGATTAGGCGATGTGTTATTTCAAGCCTTGCCTGTGAAATTACGCAACGGCGA
AAGTGCGGCGAAAAATGACCGCACTTTTTGGCGAATTACGGATGCGGGGAAAAATGCCCTTGAACAAGGCGAGTTAAAAC
GCTCGAAAAAGCAAGCTGAAGCCCTGCAATGCTTATCTGAAACCGATCTTGAAAAAGGCAATAATGATTTTTCTTCTGCT
ATTTGGTCAGCCTTAAAAGCCAAAGGGTTTATTGAGGAAATTACTATCAAAACAAATCCCCTAAGCTGGCAACAAAGATT
AGGCAATAACCCAATTGTCAATGCTGAAAATCGTTTAACCTTAAATAAGCAGCAAGCCTTAGCCTTCAGCCAACTGCTCT
TCCATTCTGGTTTCAATGTATGGCTGCTCGATGGCGTGACTGGTTCAGGTAAAACAGAAATTTATCTGCAGTATATTGAA
GAAATTTTAAAATCGGGTAAGCAAGTATTAGTGCTTGTACCCGAAATCGGGCTAACACCTCAAACGGTGCAACGTTTTAA
AGCACGTTTTAATGTAGAAATTGATGTACTGCATTCTAATTTAACCGATACGCAACGGCTTTATGTATGGGATCGCGCCC
GCTCTGGACAAAGTGCTATTGTGATTGGCACGAGATCGGCATTGTTCACGCAATTTTCTAATCTTGGTGCAATTATTTTA
GACGAGGAACACGATTCGTCTTACAAACAGCAAGACAGTTGGCGTTACCATGCACGAGATTTAGCAATCGTGCTTGCTCA
AAAACTGAACATTTCAGTATTAATGGGCTCCGCCACGCCAAGTTTAGAAAGTATTAATAATGTACAAAACGGCAAATACC
AACATTTAGTTTTATCAAAAAGAGCGGGAAATTCTACCGCACTTCGTCATTTCGTTGTTGATTTGAAAAATCAAAACATA
CAAAACGGGCTTTCGAAACCCTTATTAGAACGGATGAAAGTTCACCTCGAAAAAGGCAATCAAGTGTTGCTTTTCTTGAA
TCGTCGTGGCTTTGCGCCCGTATTGCTTTGCCATGAATGTGGTTGGATCGCACAATGCCCTCATTGTGAAAAACCTTATA
CCTATCATCAGCATCAAAATGTATTGCGTTGTCATCATTGTGGCGCACAAAAAACTATTCCTCGCCAATGTGGCGATTGC
GGTTCTACCCATTTAGTTACTACTGGTCTCGGCACGGAACAATTAGAAGAAACCTTGAAAACGCTATTTCCTCATTATTC
TGTAGCGCGAATCGACCGCGATAGCACGGCACGTAAAGGAAAATTGGAAGGTTATTTAGAAGATATTCAACAAGGCAAAA
GCCAAATTTTGATTGGCACACAAATGCTTGCGAAAGGACATCATTTCCCGAATGTTACTCTCGTTGCCTTAGTGAATGTA
GATGGTGCATTATTTTCACTGGATTTTCGTGCAGAAGAACGTTTAGCTCAACTTTATATTCAAGTTGCTGGACGTGCAGG
ACGTGCCGATAAACGAGGTGAAGTGGTGCTACAAACACATTATCCTGATCATCCTTTGCTTACCACTTTATTGGCAAATG
GCTACCAAGCTTTTGCAAAAGAAACCTTACAATTACGCCATTCAATGGGATTGCCGCCTTTTACTTTTCAGGCGTTAATC
AAAGCACAGGCTCGACATTCTGATCTTGCAGAAAATTGCTTAAGCCAAATTGCAGATTTTTTTCAATCGAAGCAAATTAC
GGGATTACAAATGCTTGGTCCAATGCCTGCACCGTTCAGCAAAAAAGCAGGGCAATATCGCTGGCAGTTATTATTGCAGC
ATCCGTCAAGAATGACGTTGCAAAAAGCATTGAGAGAATATCAACAAGCCGAACTTGAAAAAAACAGCCAAGTGCGGTTA
ATTTTGGATGTTGATCCGCAAGATTTATCATAA

Domains

Predicted by InterProScan.

Primosomal protein N C-terminal domain (PriA_C)

(633-726)

DEAD/DEAH box helicase (DEAD)

(204-366)

Helicase conserved C-terminal domain (Helicase_C)

(503-589)

3DNA-binding domain (3BD) (PriA_3primeBD)

(5-100)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(446-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

44.489

100

0.453