Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   WAE38_RS03720 Genome accession   NZ_CP147984
Coordinates   676835..677356 (+) Length   173 a.a.
NCBI ID   WP_160404857.1    Uniprot ID   -
Organism   Glaesserella parasuis strain H16SD2BY4     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 671835..682356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAE38_RS03705 (WAE38_03705) aroK 672722..673243 (-) 522 WP_015940157.1 shikimate kinase AroK -
  WAE38_RS03710 (WAE38_03710) - 673473..676028 (-) 2556 WP_062923927.1 penicillin-binding protein 1A -
  WAE38_RS03715 (WAE38_03715) comA 676182..676859 (+) 678 WP_021113429.1 hypothetical protein Machinery gene
  WAE38_RS03720 (WAE38_03720) comB 676835..677356 (+) 522 WP_160404857.1 hypothetical protein Machinery gene
  WAE38_RS03725 (WAE38_03725) comC 677353..677883 (+) 531 WP_021115650.1 hypothetical protein Machinery gene
  WAE38_RS03730 (WAE38_03730) comD 677928..678269 (+) 342 WP_234799212.1 hypothetical protein Machinery gene
  WAE38_RS03735 (WAE38_03735) comE 678279..679541 (+) 1263 WP_160404856.1 type IV pilus secretin PilQ Machinery gene
  WAE38_RS03740 (WAE38_03740) nusB 679620..680033 (+) 414 WP_021116599.1 transcription antitermination factor NusB -
  WAE38_RS03745 (WAE38_03745) thiL 680042..681010 (+) 969 WP_160404852.1 thiamine-phosphate kinase -
  WAE38_RS03750 (WAE38_03750) - 681013..681483 (+) 471 WP_005712497.1 phosphatidylglycerophosphatase A -
  WAE38_RS03755 (WAE38_03755) - 681485..682114 (+) 630 WP_160404850.1 LysE family transporter -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 20396.08 Da        Isoelectric Point: 7.3560

>NTDB_id=949829 WAE38_RS03720 WP_160404857.1 676835..677356(+) (comB) [Glaesserella parasuis strain H16SD2BY4]
MEWQGINLNGYRQQQWLKQSQKNLKHLTACLVVSTLLALLISWQNQQQQHQFHTLAQQRQQSQEQQTTLSQQIEQLTLQS
QNKSRQSLENRQITAFLNYLLGIQLSGIIEIAQLYQAENTVFKLKGKVSSPTQFSELEQQLKAMNYIYQIEQFETREKSE
IEFSLHIDLKEKE

Nucleotide


Download         Length: 522 bp        

>NTDB_id=949829 WAE38_RS03720 WP_160404857.1 676835..677356(+) (comB) [Glaesserella parasuis strain H16SD2BY4]
ATGGAATGGCAAGGCATCAATCTAAATGGCTACCGCCAACAGCAATGGTTGAAACAGTCGCAAAAAAACCTCAAGCATCT
CACCGCTTGTCTTGTGGTTAGCACACTACTGGCGTTACTTATCAGTTGGCAAAATCAACAGCAACAACATCAATTTCACA
CTTTGGCTCAACAGCGACAACAAAGCCAAGAGCAACAAACCACATTAAGCCAGCAGATTGAACAACTGACTTTGCAATCA
CAGAATAAAAGCAGACAAAGCCTAGAAAATAGGCAGATTACCGCATTTTTGAATTATCTGTTAGGCATTCAATTATCAGG
AATTATTGAGATAGCCCAACTATACCAAGCAGAAAATACCGTCTTTAAACTCAAAGGCAAAGTGTCTAGCCCTACTCAAT
TTAGCGAGCTTGAACAACAATTAAAAGCAATGAATTACATTTATCAAATAGAACAATTTGAAACGCGTGAAAAAAGCGAG
ATTGAATTTAGCCTACATATTGATTTAAAGGAAAAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Glaesserella parasuis strain SC1401

99.422

100

0.994