Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   AAA982_RS02880 Genome accession   NZ_AP028601
Coordinates   556222..556488 (+) Length   88 a.a.
NCBI ID   WP_001814186.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PF1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 551222..561488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAA982_RS02860 (TKY113292_05610) - 551434..551943 (+) 510 WP_338168334.1 N-acetyltransferase -
  AAA982_RS02865 (TKY113292_05620) pheT 552020..554425 (+) 2406 WP_338168335.1 phenylalanine--tRNA ligase subunit beta -
  AAA982_RS02870 (TKY113292_05630) - 554493..555494 (-) 1002 WP_000597985.1 endonuclease/exonuclease/phosphatase family protein -
  AAA982_RS02875 (TKY113292_05640) - 555650..556138 (+) 489 Protein_566 helix-turn-helix domain-containing protein -
  AAA982_RS02880 (TKY113292_05650) HI0659 556222..556488 (+) 267 WP_001814186.1 helix-turn-helix transcriptional regulator Machinery gene
  AAA982_RS02885 (TKY113292_05660) metE 556749..558998 (+) 2250 WP_338168336.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  AAA982_RS02890 (TKY113292_05670) metF 559062..559928 (+) 867 WP_001277841.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9641.11 Da        Isoelectric Point: 4.2720

>NTDB_id=94981 AAA982_RS02880 WP_001814186.1 556222..556488(+) (HI0659) [Streptococcus pneumoniae strain PF1]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGESSLQLDTVLKVLTSLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=94981 AAA982_RS02880 WP_001814186.1 556222..556488(+) (HI0659) [Streptococcus pneumoniae strain PF1]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAGAGAGCAGTCTTCAGTTGGATACGGTCTTAAAAGTTCTAACCAGTCTAGGAAAGACACTAGCAGTC
GTTCCACTTGAACAGGGGAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

55.844

87.5

0.489

Multiple sequence alignment