Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   WCY20_RS11195 Genome accession   NZ_CP147919
Coordinates   2260855..2262651 (+) Length   598 a.a.
NCBI ID   WP_345975180.1    Uniprot ID   -
Organism   Sulfurimonas sp. HSL3-7     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2255855..2267651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WCY20_RS11175 (WCY20_11175) guaA 2255866..2257404 (-) 1539 WP_345975174.1 glutamine-hydrolyzing GMP synthase -
  WCY20_RS11180 (WCY20_11180) nhaD 2257528..2258835 (-) 1308 WP_345975176.1 sodium:proton antiporter NhaD -
  WCY20_RS11185 (WCY20_11185) nadB 2258878..2260317 (-) 1440 WP_345978260.1 L-aspartate oxidase -
  WCY20_RS11190 (WCY20_11190) - 2260428..2260871 (+) 444 WP_345975178.1 hypothetical protein -
  WCY20_RS11195 (WCY20_11195) uvrC 2260855..2262651 (+) 1797 WP_345975180.1 excinuclease ABC subunit UvrC Machinery gene
  WCY20_RS11200 (WCY20_11200) - 2262736..2263149 (+) 414 WP_345975182.1 PAS domain-containing protein -
  WCY20_RS11205 (WCY20_11205) - 2263159..2264844 (+) 1686 WP_345975184.1 Hpt domain-containing protein -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 68689.22 Da        Isoelectric Point: 9.7328

>NTDB_id=949742 WCY20_RS11195 WP_345975180.1 2260855..2262651(+) (uvrC) [Sulfurimonas sp. HSL3-7]
MINTIRNLPKSPGIYQYFDRNGKLLYVGKAKNLYNRVKSYFLFSPTLRPNSKLSPRIVKMLGETTSMHYIVVKSEHDALI
LENSLIKQLKPKYNILLRDDKTYPYIYIDTSEPFPRFEITRKLLKGSHIAYFGPYSVGARDILDSVYELCKLVQKKSCLK
GKKACLYYQMDQCLAPCEKKVTPEVYNAIVQEGIRYIENKNVLISKLKEKMAFYAENLRFEEAGTLRDRIERIAKSELIS
QIDLASTENYDIFAISHNNQRAAVVRLFMRSGRIISSSHDIINLNSGFDIDEAYERALLEFYGHEKPPIIAPILVAHDFK
ERALVEEHLSLLFEKKATITLPQRGNKKRLTELALTNADELLRQKKNNTTETIAKQLQELLTLERLPRRIEAFDNSHMAG
EATVGGMIVFDNEGFDKSGYRHYHLEARDEYGQMRETLSRRIAGFEENPPPDLWLIDGGTTLLTLAKELLESAGVNLDVI
AISKEKIDAKSHRAKGSAHDQLHSITESFKLSPSDKRLQWMQRLRDEAHRYAITFHKKTKLKRDQASKLLNTHGISQAKV
VKLLQHFGTFDALKNATQEEITAILNQSDAKKIKMIYK

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=949742 WCY20_RS11195 WP_345975180.1 2260855..2262651(+) (uvrC) [Sulfurimonas sp. HSL3-7]
ATGATAAACACCATTAGAAACCTTCCCAAATCACCCGGTATCTATCAATATTTTGACCGAAACGGCAAGCTACTCTATGT
AGGTAAAGCGAAAAACCTTTACAACCGGGTCAAAAGCTACTTCCTATTCAGTCCGACACTGCGGCCAAACAGCAAACTTT
CACCTCGTATTGTCAAGATGCTCGGCGAGACTACATCGATGCACTACATCGTTGTCAAAAGCGAACACGACGCCCTGATC
CTGGAAAACTCGCTGATCAAACAGCTCAAACCCAAATACAATATTCTGTTGCGCGATGACAAGACCTACCCCTATATCTA
TATCGACACCAGTGAGCCCTTCCCTAGATTCGAGATCACCCGAAAACTTCTTAAAGGCAGTCATATAGCGTATTTCGGCC
CCTATTCCGTCGGCGCGCGCGATATTCTGGACTCTGTGTACGAGCTCTGCAAGCTGGTTCAGAAGAAGAGCTGTCTCAAG
GGCAAGAAAGCCTGTCTTTACTACCAGATGGATCAATGCCTTGCCCCTTGTGAAAAAAAAGTCACTCCGGAGGTTTACAA
TGCGATCGTGCAAGAGGGTATCCGCTATATCGAAAACAAAAATGTTTTGATTTCGAAACTTAAAGAGAAGATGGCTTTTT
ATGCAGAAAACCTGCGCTTTGAGGAGGCAGGCACACTTCGCGATCGCATTGAGCGGATCGCCAAAAGCGAGCTGATCTCA
CAGATCGATCTCGCTTCAACCGAGAACTATGACATCTTTGCCATCAGCCACAACAATCAACGTGCAGCAGTGGTACGGCT
TTTTATGCGTTCGGGCAGGATTATCTCCTCTTCACACGACATTATAAACCTTAACAGCGGATTCGATATCGATGAAGCGT
ATGAGCGTGCTTTACTGGAGTTTTACGGCCATGAAAAACCTCCTATTATCGCACCGATTCTAGTGGCCCATGACTTTAAA
GAAAGAGCACTCGTTGAAGAGCACCTCTCGCTTCTTTTTGAGAAAAAAGCGACGATCACTCTACCGCAGCGCGGCAACAA
GAAACGCCTTACCGAGCTCGCCTTGACCAATGCAGACGAGCTCCTGCGCCAAAAGAAAAACAACACGACTGAAACTATCG
CGAAACAGCTTCAGGAACTGCTCACACTTGAGCGGTTGCCCCGCAGGATAGAGGCCTTTGACAACTCGCATATGGCAGGA
GAAGCGACGGTTGGCGGTATGATCGTCTTTGACAATGAAGGATTCGACAAGTCAGGTTATCGTCACTACCACCTTGAAGC
ACGCGATGAATACGGACAGATGCGGGAGACACTCTCACGGCGAATCGCAGGTTTTGAAGAGAACCCGCCTCCTGACCTAT
GGCTCATCGACGGCGGTACAACACTTTTGACACTGGCCAAAGAGCTTTTGGAATCTGCCGGCGTCAACCTGGACGTTATC
GCCATCTCCAAAGAGAAGATCGATGCCAAGTCCCATCGGGCCAAAGGAAGCGCTCACGATCAACTCCACAGTATAACGGA
GAGTTTTAAGCTGTCACCTTCGGATAAACGGCTGCAGTGGATGCAGCGGCTGCGGGATGAAGCGCACCGCTATGCTATCA
CCTTCCATAAAAAGACCAAGCTCAAACGTGACCAAGCCTCAAAGCTCTTAAATACACACGGCATATCACAGGCAAAAGTG
GTCAAGCTTCTTCAGCATTTTGGCACTTTCGATGCATTGAAAAATGCCACTCAAGAAGAGATTACAGCCATACTGAACCA
AAGTGATGCAAAAAAAATCAAGATGATATATAAATAA

Domains

Predicted by InterproScan.

UvrB/uvrC motif (UVR)

(203-234)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(378-533)

GIY-YIG catalytic domain (GIY-YIG)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

49.066

98.495

0.483