Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   WCY03_RS02445 Genome accession   NZ_CP147918
Coordinates   465873..467669 (-) Length   598 a.a.
NCBI ID   WP_345993412.1    Uniprot ID   -
Organism   Sulfurimonas sp. HSL-1716     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 460873..472669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WCY03_RS02435 (WCY03_02435) - 463447..465390 (-) 1944 WP_345993410.1 Hpt domain-containing protein -
  WCY03_RS02440 (WCY03_02440) - 465400..465813 (-) 414 WP_345993411.1 PAS domain-containing protein -
  WCY03_RS02445 (WCY03_02445) uvrC 465873..467669 (-) 1797 WP_345993412.1 excinuclease ABC subunit UvrC Machinery gene
  WCY03_RS02450 (WCY03_02450) - 467653..467997 (-) 345 WP_345993413.1 hypothetical protein -
  WCY03_RS02455 (WCY03_02455) - 468064..468231 (+) 168 WP_345993414.1 hypothetical protein -
  WCY03_RS02460 (WCY03_02460) nadB 468231..469673 (+) 1443 WP_345994056.1 L-aspartate oxidase -
  WCY03_RS02465 (WCY03_02465) nhaD 469683..470984 (+) 1302 WP_345993415.1 sodium:proton antiporter NhaD -
  WCY03_RS02470 (WCY03_02470) guaA 471082..472632 (+) 1551 WP_345993416.1 glutamine-hydrolyzing GMP synthase -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 69285.92 Da        Isoelectric Point: 9.2380

>NTDB_id=949724 WCY03_RS02445 WP_345993412.1 465873..467669(-) (uvrC) [Sulfurimonas sp. HSL-1716]
MIDKIKDLPPSAGIYQYFNDKGQLLYIGKAKNLKNRVKSYWYFTPSLRPNPSLNPRIVKMLEETASINYIVVQNEHDALI
LENSLIKQLKPKYNILLRDDKTYPYIYIDYSKEYPRFEITRKIINAKDVKYFGPYSVGARDILDSVYELCMLVQKKGCLK
GKKACLYYQIKKCLAPCEFDVKSERYRQETDKAVNYIENKKELIKKLQEKMSFYAEELRFEEASEIKNRIQNIQKSNIVS
QIDLATNDNYDIFCISHKENRAIVVRIFMRNGKVVSSSHDFIYLNEGFDEDEIYYRAVMEYYGSEAPPIIAPVLVAHEFE
SKKLLQEYLSAVFNKKAQITNPKRGDKKRLTDLAMLNADELLNKTKNDTSYELALLVQELFKLQRTPLRIEVFDNSHMSG
QATVGAMIVYESGIFDKKAYRTYHLDSKDEYSQMREMLTKRIESFEKNTPPDLWILDGGETLLKLAIDLLDSNGVFLDVI
AVSKEKIDAKAHRAKGEAKDIIHTADTSFNLKPTDKRLQFVQRLRDEAHRSAVTFHKKTKLKLDQESKLLSLKGISEAKI
KKLLSYFGTFEAIRAAGEDEIVSVLNEKDAKTIKLLYN

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=949724 WCY03_RS02445 WP_345993412.1 465873..467669(-) (uvrC) [Sulfurimonas sp. HSL-1716]
ATGATAGACAAGATTAAAGACCTGCCGCCCTCAGCGGGAATATACCAGTATTTTAACGACAAAGGGCAGCTGCTTTACAT
CGGCAAAGCCAAAAACCTGAAAAACCGTGTAAAGAGCTACTGGTATTTCACTCCGTCTCTACGGCCGAATCCCTCTCTCA
ATCCAAGAATCGTAAAGATGCTGGAGGAGACTGCATCCATAAACTACATAGTCGTTCAAAACGAACATGACGCACTCATA
CTCGAAAACTCTCTGATAAAACAGCTCAAGCCAAAATACAACATTCTCCTGCGCGACGACAAGACATACCCCTATATCTA
CATAGACTACTCAAAAGAGTATCCGAGATTCGAGATAACCCGAAAGATCATAAACGCCAAAGATGTAAAATACTTCGGTC
CCTATTCCGTAGGAGCCAGAGACATTCTTGATTCTGTGTATGAACTGTGCATGCTCGTTCAGAAAAAAGGCTGTCTCAAA
GGCAAAAAAGCATGTCTGTACTACCAGATAAAAAAATGTCTGGCACCATGCGAGTTCGATGTCAAAAGCGAGCGCTATCG
TCAAGAGACAGACAAAGCCGTAAACTACATAGAAAACAAAAAAGAGCTTATAAAAAAGCTTCAGGAAAAGATGTCTTTTT
ATGCCGAGGAGCTTCGTTTTGAAGAAGCCAGCGAGATCAAAAACAGGATCCAGAACATACAAAAGTCCAACATCGTTTCC
CAGATAGATCTTGCCACGAACGACAATTACGACATCTTCTGCATCTCGCATAAAGAGAATCGTGCGATCGTAGTGAGAAT
CTTTATGAGAAACGGCAAAGTGGTTTCATCCTCGCATGACTTCATATACCTCAACGAAGGCTTTGACGAGGACGAGATAT
ATTACCGTGCCGTCATGGAGTATTACGGCAGCGAAGCACCTCCGATAATCGCGCCTGTTTTGGTAGCCCATGAATTTGAA
TCAAAAAAACTGCTCCAAGAGTATCTCTCCGCCGTTTTTAACAAAAAAGCGCAAATAACGAATCCCAAACGAGGGGATAA
AAAAAGATTGACGGATCTTGCCATGCTCAATGCCGATGAGCTTTTAAACAAAACTAAAAACGACACTTCATACGAGCTCG
CCCTTTTAGTCCAGGAACTTTTCAAACTTCAAAGAACACCTCTGCGCATCGAAGTATTCGACAACTCTCATATGAGCGGA
CAGGCGACTGTCGGAGCGATGATAGTATATGAAAGCGGTATCTTTGACAAAAAAGCGTACAGAACGTACCATCTGGATTC
CAAAGACGAGTATTCACAGATGAGAGAGATGCTGACAAAAAGGATCGAAAGCTTTGAGAAAAACACCCCGCCGGACCTGT
GGATACTCGACGGAGGAGAAACGCTTCTCAAACTGGCTATCGATCTGCTTGATTCAAACGGAGTTTTTTTGGATGTCATC
GCCGTCTCAAAAGAGAAGATAGACGCAAAAGCCCACAGAGCAAAAGGAGAAGCCAAAGACATCATTCACACGGCAGATAC
AAGCTTTAACCTGAAGCCGACCGACAAAAGGCTTCAATTCGTCCAAAGATTAAGAGATGAAGCTCACAGAAGCGCCGTTA
CGTTTCATAAAAAAACAAAGCTGAAACTCGACCAGGAAAGTAAACTTTTATCGCTAAAAGGCATATCTGAAGCAAAGATC
AAAAAGCTTTTAAGCTATTTTGGAACGTTTGAAGCGATTAGGGCCGCAGGGGAAGATGAAATCGTTTCTGTATTAAATGA
AAAAGACGCCAAAACCATAAAATTACTTTACAACTAA

Domains

Predicted by InterproScan.

UvrB/uvrC motif (UVR)

(201-235)

GIY-YIG catalytic domain (GIY-YIG)

(13-94)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(378-533)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

50.507

98.997

0.5