Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   WCX87_RS01900 Genome accession   NZ_CP147917
Coordinates   360515..362311 (-) Length   598 a.a.
NCBI ID   WP_345980353.1    Uniprot ID   -
Organism   Sulfurimonas sp. HSL3-2     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 355515..367311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WCX87_RS01890 (WCX87_01890) - 358119..360032 (-) 1914 WP_345980351.1 Hpt domain-containing protein -
  WCX87_RS01895 (WCX87_01895) - 360042..360455 (-) 414 WP_345980352.1 PAS domain-containing protein -
  WCX87_RS01900 (WCX87_01900) uvrC 360515..362311 (-) 1797 WP_345980353.1 excinuclease ABC subunit UvrC Machinery gene
  WCX87_RS01905 (WCX87_01905) - 362295..362741 (-) 447 WP_345980354.1 hypothetical protein -
  WCX87_RS01910 (WCX87_01910) nadB 362855..364297 (+) 1443 WP_345981083.1 L-aspartate oxidase -
  WCX87_RS01915 (WCX87_01915) nhaD 364307..365608 (+) 1302 WP_345980355.1 sodium:proton antiporter NhaD -
  WCX87_RS01920 (WCX87_01920) guaA 365715..367265 (+) 1551 WP_345980356.1 glutamine-hydrolyzing GMP synthase -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 69172.82 Da        Isoelectric Point: 9.2277

>NTDB_id=949713 WCX87_RS01900 WP_345980353.1 360515..362311(-) (uvrC) [Sulfurimonas sp. HSL3-2]
MIDKIKNLPQSAGIYQYFNEKGQLLYIGKAKNLKNRVKSYWYFTPSLRPNPALNPRIVKMLNETASMNYIVVNSEHDALI
LENSLIKQLKPKYNILLRDDKTYPYIYIDYSEKYPRFDITRKIINAKEVKYFGPYSVGARDILDSIYELCKLVQKKSCLK
GKKACLYYQIKKCLAPCEFNIKSELYQKEIDKAVSYIENKKELIKELKEKMFFYAEELRFEEANEIKNRVQSIEKSNIIS
QIDLASNDNFDIFCISYKENRAVVVRVFMRNGKVVSSSHDFIYLNEGFDKDEIYYRAIMEYYGNEAPPIIAPILVADEFE
SKAVLEEYLSSLFGKKADISNPKRGDKKRLIDLALLNADELLNKTKSDNTYELAAAVKELFKLQRLPLRIEVFDNSHMAG
QATVGAMVVYENGAFDKGSYRTYHLEARDEYAQMKEILTKRIESFEKNTPPDLWILDGGETLLKLAEQLIESSGVFLDVI
AISKEKIDAKSHRAKGEARDIIHTLYESFNLKTTDKRLQFVQRLRDEAHRSAITFHKKTKLKLDQESKLLSLNGISSAKI
QKLLSYFGTFEMIKSASEDEIASILNQKDAKTIKLSYK

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=949713 WCX87_RS01900 WP_345980353.1 360515..362311(-) (uvrC) [Sulfurimonas sp. HSL3-2]
ATGATAGACAAGATTAAAAACCTGCCGCAATCTGCGGGAATATATCAGTATTTTAATGAAAAAGGGCAGCTCCTTTACAT
CGGTAAAGCAAAGAACCTTAAAAACCGTGTAAAAAGCTACTGGTACTTTACTCCTTCACTTCGTCCAAATCCCGCTCTGA
ATCCAAGAATCGTAAAGATGCTAAACGAGACAGCGTCTATGAACTACATAGTCGTAAACAGCGAACATGACGCACTTATA
CTTGAAAACTCCCTTATCAAGCAGCTCAAACCAAAATACAATATCCTGCTTCGCGATGACAAGACCTATCCTTACATCTA
CATAGACTATTCAGAAAAATATCCAAGGTTTGATATAACAAGAAAGATCATAAACGCTAAAGAGGTAAAGTATTTCGGTC
CCTACTCCGTAGGAGCCAGAGATATCCTTGATTCCATCTACGAACTCTGTAAACTTGTCCAGAAAAAAAGCTGTCTCAAA
GGCAAAAAAGCGTGTCTGTACTATCAGATAAAAAAATGTCTGGCACCATGCGAGTTTAATATCAAAAGTGAACTTTATCA
AAAAGAGATAGACAAAGCCGTAAGTTATATAGAAAACAAAAAAGAGCTTATTAAAGAGCTTAAAGAAAAGATGTTTTTTT
ATGCTGAAGAGCTTCGTTTCGAAGAGGCAAACGAGATAAAAAACAGAGTTCAAAGTATAGAAAAATCTAATATTATATCT
CAAATAGATCTTGCTTCAAACGACAACTTCGACATTTTCTGCATATCGTACAAAGAGAACCGTGCAGTCGTTGTCAGGGT
CTTTATGAGAAACGGTAAAGTGGTCTCATCTTCACATGATTTTATCTATCTAAACGAAGGCTTTGACAAAGACGAGATAT
ATTACCGCGCGATCATGGAGTACTACGGAAACGAAGCACCTCCTATCATCGCACCGATTTTAGTAGCTGACGAGTTTGAA
TCAAAAGCGGTTTTAGAAGAGTACCTCTCCTCTTTATTCGGTAAAAAAGCCGATATCTCAAATCCTAAACGAGGCGATAA
AAAAAGACTGATCGATCTGGCTTTACTCAATGCCGATGAACTGCTGAATAAGACAAAATCAGATAATACTTATGAGCTGG
CTGCAGCAGTAAAAGAGCTTTTCAAACTTCAGCGTTTACCTTTACGGATAGAGGTCTTTGACAACTCTCATATGGCAGGT
CAGGCAACAGTCGGAGCAATGGTAGTGTATGAAAACGGTGCGTTCGACAAAGGATCTTACAGGACCTATCATCTTGAAGC
CCGTGATGAATATGCCCAGATGAAAGAGATACTGACAAAAAGGATCGAAAGTTTCGAAAAAAACACTCCGCCTGATCTGT
GGATACTCGACGGCGGAGAGACACTGCTTAAACTTGCAGAGCAGCTCATTGAATCGAGTGGAGTCTTTTTAGACGTCATT
GCCATATCAAAAGAGAAGATAGACGCAAAATCCCACAGAGCTAAAGGTGAAGCAAGAGACATCATCCATACCCTCTATGA
GAGTTTCAACTTAAAGACTACGGACAAAAGACTGCAGTTTGTCCAAAGACTCAGAGATGAAGCCCATAGAAGTGCTATTA
CATTCCATAAAAAAACCAAGCTAAAACTTGACCAAGAAAGTAAACTTTTATCATTAAACGGAATATCTTCTGCAAAGATA
CAAAAGCTTTTAAGCTATTTTGGGACATTTGAAATGATTAAATCTGCAAGCGAAGATGAAATTGCTTCTATATTAAACCA
AAAAGATGCAAAAACTATAAAATTATCTTACAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix domain (HHH_5)

(548-596)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(378-533)

UvrB/uvrC motif (UVR)

(201-235)

GIY-YIG catalytic domain (GIY-YIG)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

50.169

98.662

0.495