Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACHMJP_RS15375 Genome accession   NZ_CP171883
Coordinates   3024663..3025292 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain STECUZB006     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3019663..3030292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHMJP_RS15360 helD 3019905..3021959 (-) 2055 WP_407095288.1 DNA helicase IV -
  ACHMJP_RS15365 yccF 3022082..3022528 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ACHMJP_RS15370 yccS 3022538..3024700 (+) 2163 WP_000875061.1 YccS family putative transporter -
  ACHMJP_RS15375 sxy/tfoX 3024663..3025292 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACHMJP_RS15380 sulA 3025511..3026020 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACHMJP_RS15385 ompA 3026377..3027417 (+) 1041 WP_000750416.1 porin OmpA -
  ACHMJP_RS15390 matP 3027493..3027945 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACHMJP_RS15395 ycbZ 3028131..3029891 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=949700 ACHMJP_RS15375 WP_000839153.1 3024663..3025292(-) (sxy/tfoX) [Escherichia coli strain STECUZB006]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=949700 ACHMJP_RS15375 WP_000839153.1 3024663..3025292(-) (sxy/tfoX) [Escherichia coli strain STECUZB006]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1