Detailed information NTG0949672

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACHMJP_RS05000
• Genome accession: NZ_CP171883
• Coordinates: 1018999..1019991 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain STECUZB006
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1013999..1024991

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACHMJP_RS04970	ispD	1014060..1014770 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACHMJP_RS04975	ispF	1014770..1015249 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACHMJP_RS04980	truD	1015246..1016295 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
ACHMJP_RS04985	surE	1016276..1017037 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACHMJP_RS04990	pcm	1017031..1017657 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACHMJP_RS04995	nlpD	1017842..1018936 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
ACHMJP_RS05000	rpoS	1018999..1019991 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACHMJP_RS05005	ygbN	1020085..1021449 (-)	1365	WP_000104459.1	GntP family transporter	-
ACHMJP_RS05010	ygbM	1021538..1022314 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
ACHMJP_RS05015	ygbL	1022319..1022957 (-)	639	WP_001278994.1	aldolase	-
ACHMJP_RS05020	otnK	1022954..1024216 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=949672 ACHMJP_RS05000 WP_000081550.1 1018999..1019991(+) (rpoS) [Escherichia coli strain STECUZB006]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=949672 ACHMJP_RS05000 WP_000081550.1 1018999..1019991(+) (rpoS) [Escherichia coli strain STECUZB006]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715