Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   WA016_RS11145 Genome accession   NZ_CP147913
Coordinates   2915181..2916542 (+) Length   453 a.a.
NCBI ID   WP_338870043.1    Uniprot ID   -
Organism   Myxococcus stipitatus strain KYC2006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2910181..2921542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WA016_RS11120 (WA016_02253) - 2910237..2911406 (-) 1170 WP_338870036.1 pyridoxal phosphate-dependent aminotransferase -
  WA016_RS11125 (WA016_02254) - 2911403..2911681 (-) 279 WP_338870038.1 hypothetical protein -
  WA016_RS11130 (WA016_02255) bioD 2911814..2912491 (-) 678 WP_338870040.1 dethiobiotin synthase -
  WA016_RS11135 (WA016_02256) bioF 2912700..2913866 (-) 1167 WP_338873621.1 8-amino-7-oxononanoate synthase -
  WA016_RS11140 (WA016_02257) bioB 2913925..2914959 (-) 1035 WP_338870042.1 biotin synthase BioB -
  WA016_RS11145 (WA016_02258) radA 2915181..2916542 (+) 1362 WP_338870043.1 DNA repair protein RadA Machinery gene
  WA016_RS11150 (WA016_02259) - 2916565..2916987 (-) 423 WP_338870045.1 helix-turn-helix domain-containing protein -
  WA016_RS11155 (WA016_02260) - 2917098..2917508 (+) 411 WP_338870047.1 DoxX family protein -
  WA016_RS11160 (WA016_02261) - 2917572..2918168 (-) 597 WP_338870049.1 hypothetical protein -
  WA016_RS11165 (WA016_02262) - 2918195..2918893 (-) 699 WP_338870051.1 STAS domain-containing protein -
  WA016_RS11170 (WA016_02263) - 2919135..2919857 (+) 723 WP_338870052.1 hemolysin III family protein -
  WA016_RS11175 (WA016_02264) - 2920074..2920598 (+) 525 WP_338870054.1 ABATE domain-containing protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48112.44 Da        Isoelectric Point: 7.6643

>NTDB_id=949670 WA016_RS11145 WP_338870043.1 2915181..2916542(+) (radA) [Myxococcus stipitatus strain KYC2006]
MAKAKTHYTCQACGYQTAKWLGKCPDCGAWSSLLEEAGAKDDEKRPAWGASGGAARPMLLKEVSGESEVRRRTGIAEFDR
VLGGGVVSGSVVLLGGDPGIGKSTLLLAALDRLARHGAVLYVSGEESLRQTKMRAERLRVDGENIHLFAETDAERVLVAA
ESLKPQALVVDSIQTMYLPELGNAPGSITQVREVAGRLMAYAKRTGVPTFIVGHVTKEGSIAGPRVLEHMVDTVLYFEGE
RGHPFRILRAHKNRFGSTNEIGVFEMKGAGLVEVADPSALFLSERPVGKSGSVVTSTLNGTRPLLVEVQALVAPTGYGTA
RRTAIGVDGNRVALLAAVLEKKEEIPLVGCDLFVNVAGGMQLNEPACDLAVCAALVSSLQNRPLDPHTLVLGEVGLAGEV
RAVGQVEPRLAEAAKMGFQRVVMPAGSARRMESTKLRVVGVETLGDALRAMFD

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=949670 WA016_RS11145 WP_338870043.1 2915181..2916542(+) (radA) [Myxococcus stipitatus strain KYC2006]
ATGGCGAAGGCGAAGACGCACTACACCTGCCAGGCGTGCGGGTACCAGACGGCGAAGTGGCTGGGGAAGTGCCCGGATTG
CGGCGCGTGGAGTTCGTTGCTCGAGGAGGCGGGAGCCAAGGACGACGAGAAGCGCCCCGCGTGGGGGGCCTCGGGAGGCG
CCGCGCGGCCCATGCTCCTCAAGGAGGTCAGCGGAGAGTCGGAGGTGCGCCGCCGCACCGGCATCGCCGAGTTCGACCGG
GTGCTCGGCGGAGGCGTGGTGAGCGGCTCGGTGGTGCTCCTGGGCGGAGACCCGGGCATCGGAAAGTCCACGCTGCTGCT
CGCGGCGCTCGACAGGCTCGCCCGGCACGGCGCCGTGCTCTACGTCTCCGGTGAAGAGAGCCTGCGCCAGACGAAGATGC
GCGCGGAGCGCCTGCGCGTGGACGGCGAGAACATCCACCTCTTCGCGGAGACGGACGCGGAGCGGGTGCTGGTCGCCGCC
GAGTCGCTCAAGCCTCAAGCGCTCGTGGTGGACTCGATTCAGACCATGTACCTGCCGGAGCTGGGCAACGCGCCGGGCAG
CATCACCCAGGTGCGCGAGGTGGCGGGCCGGCTGATGGCCTACGCCAAGCGCACGGGTGTCCCCACCTTCATCGTGGGCC
ACGTAACGAAGGAAGGCTCCATCGCCGGCCCGCGCGTGCTCGAGCACATGGTGGACACCGTCCTCTACTTCGAGGGCGAG
CGCGGCCACCCCTTCCGAATCCTCCGCGCGCACAAGAACCGCTTCGGCTCCACCAACGAGATTGGCGTCTTCGAGATGAA
GGGCGCGGGCCTGGTGGAAGTCGCGGACCCCTCCGCGCTGTTCCTGTCCGAGCGCCCCGTGGGCAAGTCCGGCAGCGTCG
TCACCAGCACGCTCAACGGAACCCGCCCGCTGCTCGTGGAGGTCCAGGCGCTGGTGGCCCCCACCGGCTACGGCACCGCG
CGGCGCACGGCCATCGGCGTGGATGGCAACCGCGTGGCGCTGCTCGCCGCGGTGCTGGAGAAGAAGGAAGAGATTCCGCT
GGTGGGCTGCGACTTGTTCGTCAACGTCGCGGGCGGCATGCAACTCAACGAGCCCGCCTGTGATTTGGCCGTCTGCGCGG
CGCTGGTGAGCAGCCTCCAGAACCGCCCGTTGGACCCGCACACCCTGGTGCTGGGCGAAGTGGGGCTCGCCGGAGAGGTG
CGCGCGGTGGGCCAGGTGGAGCCCCGGCTCGCCGAGGCCGCGAAGATGGGCTTCCAGCGAGTGGTGATGCCCGCGGGCAG
CGCCCGGCGCATGGAGTCCACCAAGCTGCGCGTGGTGGGCGTGGAGACCCTGGGCGACGCGCTGCGGGCCATGTTCGACT
GA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(351-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-33)

AAA domain (AAA_25)

(81-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.759

100

0.528
  radA Streptococcus mitis NCTC 12261

52.423

100

0.525
  radA Streptococcus pneumoniae Rx1

52.423

100

0.525
  radA Streptococcus pneumoniae D39

52.423

100

0.525
  radA Streptococcus pneumoniae R6

52.423

100

0.525
  radA Streptococcus pneumoniae TIGR4

52.423

100

0.525
  radA Streptococcus mitis SK321

52.203

100

0.523