Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NGK38_RS08735 Genome accession   NZ_AP025895
Coordinates   1843729..1844355 (+) Length   208 a.a.
NCBI ID   WP_017384804.1    Uniprot ID   A0AA37AJW2
Organism   Enterobacter hormaechei strain FUJ80191     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1838729..1849355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGK38_RS08715 (FJMB80191_17070) - 1839128..1840888 (-) 1761 WP_032647912.1 Lon protease family protein -
  NGK38_RS08720 (FJMB80191_17080) matP 1841075..1841527 (+) 453 WP_006809347.1 macrodomain Ter protein MatP -
  NGK38_RS08725 (FJMB80191_17090) ompA 1841593..1842645 (-) 1053 WP_017694761.1 porin OmpA -
  NGK38_RS08730 (FJMB80191_17100) sulA 1843002..1843511 (-) 510 WP_032104231.1 SOS-induced cell division inhibitor SulA -
  NGK38_RS08735 (FJMB80191_17110) sxy/tfoX 1843729..1844355 (+) 627 WP_017384804.1 TfoX/Sxy family DNA transformation protein Regulator
  NGK38_RS08740 (FJMB80191_17120) yccS 1844312..1846474 (-) 2163 WP_015570895.1 YccS family putative transporter -
  NGK38_RS08745 (FJMB80191_17130) - 1846493..1846939 (-) 447 WP_003858149.1 YccF domain-containing protein -
  NGK38_RS08750 (FJMB80191_17140) helD 1847062..1849116 (+) 2055 WP_023296275.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24018.63 Da        Isoelectric Point: 9.4592

>NTDB_id=94952 NGK38_RS08735 WP_017384804.1 1843729..1844355(+) (sxy/tfoX) [Enterobacter hormaechei strain FUJ80191]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELMEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=94952 NGK38_RS08735 WP_017384804.1 1843729..1844355(+) (sxy/tfoX) [Enterobacter hormaechei strain FUJ80191]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAAGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTGACACTGATGAAACGAGGACGGCCAGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAGCTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAATCGGCTTAAGGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCCATCGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTATGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572

Multiple sequence alignment