Detailed information NTG0949448

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACHMKI_RS16560
• Genome accession: NZ_CP171864
• Coordinates: 3431214..3432206 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain YZ22PE106
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3426214..3437206

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACHMKI_RS16540	otnK	3426989..3428251 (+)	1263	WP_000590405.1	3-oxo-tetronate kinase	-
ACHMKI_RS16545	ygbL	3428248..3428886 (+)	639	WP_001278994.1	aldolase	-
ACHMKI_RS16550	ygbM	3428891..3429667 (+)	777	WP_001136918.1	HPr family phosphocarrier protein	-
ACHMKI_RS16555	ygbN	3429756..3431120 (+)	1365	WP_222899277.1	GntP family transporter	-
ACHMKI_RS16560	rpoS	3431214..3432206 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACHMKI_RS16565	nlpD	3432269..3433363 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
ACHMKI_RS16570	pcm	3433548..3434174 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACHMKI_RS16575	surE	3434168..3434929 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACHMKI_RS16580	truD	3434910..3435959 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ACHMKI_RS16585	ispF	3435956..3436435 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACHMKI_RS16590	ispD	3436435..3437145 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=949448 ACHMKI_RS16560 WP_000081550.1 3431214..3432206(-) (rpoS) [Escherichia coli strain YZ22PE106]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=949448 ACHMKI_RS16560 WP_000081550.1 3431214..3432206(-) (rpoS) [Escherichia coli strain YZ22PE106]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715