Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ACHGPQ_RS09245 Genome accession   NZ_CP171856
Coordinates   1920164..1921534 (+) Length   456 a.a.
NCBI ID   WP_011001321.1    Uniprot ID   Q8XZM3
Organism   Ralstonia pseudosolanacearum strain NIB_Z_3685     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1915164..1926534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHGPQ_RS09225 (ACHGPQ_09225) rimI 1915401..1915934 (+) 534 WP_011001317.1 ribosomal protein S18-alanine N-acetyltransferase -
  ACHGPQ_RS09230 (ACHGPQ_09230) - 1916005..1916889 (+) 885 WP_197369367.1 uracil-DNA glycosylase -
  ACHGPQ_RS09235 (ACHGPQ_09235) lplT 1917010..1918326 (-) 1317 WP_011001319.1 lysophospholipid transporter LplT -
  ACHGPQ_RS09240 (ACHGPQ_09240) alr 1918957..1920084 (+) 1128 WP_104072249.1 alanine racemase -
  ACHGPQ_RS09245 (ACHGPQ_09245) radA/sms 1920164..1921534 (+) 1371 WP_011001321.1 DNA repair protein RadA Machinery gene
  ACHGPQ_RS09250 (ACHGPQ_09250) - 1921628..1922107 (+) 480 WP_011001322.1 disulfide bond formation protein B -
  ACHGPQ_RS09255 (ACHGPQ_09255) - 1922118..1922639 (+) 522 WP_058907328.1 DUF523 domain-containing protein -
  ACHGPQ_RS09260 (ACHGPQ_09260) - 1922622..1923728 (-) 1107 WP_197369368.1 CaiB/BaiF CoA transferase family protein -
  ACHGPQ_RS09265 (ACHGPQ_09265) - 1923760..1925691 (-) 1932 WP_197369369.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48369.81 Da        Isoelectric Point: 7.6668

>NTDB_id=949372 ACHGPQ_RS09245 WP_011001321.1 1920164..1921534(+) (radA/sms) [Ralstonia pseudosolanacearum strain NIB_Z_3685]
MAKSKTVYTCTECGGTSPKWAGQCPHCQQWNTLVETVAQPASGAGARFQSLAASAVVRKLADIDAVDVPRFSSGIDEFDR
VLGGGLVGGGVVLIGGDPGIGKSTLLLQALSNLAASRRVLYVSGEESGAQIALRARRLGVESPNLALLAEIQLERIQATI
EAEKPEVVVIDSIQTLYSEALTSAPGSVAQVRECAAQLTRIAKRLDVTTILVGHVTKEGALAGPRVLEHIVDTVLYFEGD
THSAYRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQTVPGSCVLVTQEGTRPLLVEIQALVDAAGVPNP
RRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKPLPRGLVVFGEIGLAGEI
RPTPRGQERLKEAAKLGFSIAVIPKSNAPKQPIDGLQVIAVERIEQAIDRVRGLEA

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=949372 ACHGPQ_RS09245 WP_011001321.1 1920164..1921534(+) (radA/sms) [Ralstonia pseudosolanacearum strain NIB_Z_3685]
TTGGCCAAGAGCAAGACGGTCTATACGTGCACCGAGTGCGGCGGCACGTCGCCGAAATGGGCGGGGCAGTGCCCGCATTG
CCAGCAGTGGAACACGCTGGTGGAAACCGTGGCGCAGCCGGCGTCCGGCGCCGGCGCGCGCTTCCAGTCGCTGGCGGCGA
GCGCCGTGGTGCGCAAGCTGGCGGACATCGACGCCGTGGACGTGCCGCGCTTCTCCAGCGGCATCGACGAATTCGACCGC
GTGCTGGGCGGCGGCCTGGTCGGCGGCGGCGTGGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGTCGACGCTGCTGCT
GCAGGCGCTGTCCAACCTGGCGGCCAGCCGGCGCGTGCTGTATGTGAGCGGCGAGGAGTCCGGCGCGCAGATCGCGCTGC
GGGCGCGGCGCCTGGGCGTCGAAAGCCCGAACCTGGCGCTGCTGGCCGAGATCCAGCTCGAGCGCATCCAGGCCACCATC
GAGGCGGAGAAGCCCGAGGTGGTCGTCATCGACTCCATCCAGACGCTGTACTCGGAGGCGCTGACCTCGGCGCCGGGCTC
GGTGGCCCAGGTGCGCGAATGCGCGGCGCAGCTCACGCGCATCGCCAAGCGGCTGGACGTGACCACCATCCTGGTCGGCC
ACGTGACCAAGGAGGGCGCACTGGCGGGCCCGCGCGTGCTGGAGCACATCGTCGATACGGTGCTGTATTTCGAGGGCGAC
ACGCATTCGGCCTACCGGCTGGTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAGCTGGGCGTGTTCGCCATGAC
CGAGCGCGGCCTGCGTGGCGTGGCGAATCCGTCGGCGCTGTTCCTGTCGCAGCACGAGCAGACCGTGCCGGGCTCGTGCG
TGCTGGTGACGCAGGAGGGCACGCGCCCGCTGCTGGTGGAGATCCAGGCGCTGGTGGATGCGGCGGGCGTGCCGAACCCG
CGGCGGCTGGCGGTGGGCCTGGAGCAGAACCGGCTGGCGATGCTGCTGGCGGTGCTGCACCGGCACGCGGGCATTGCCTG
CTTTGACCAGGACGTGTTCCTCAATGCCGTGGGCGGGGTCAAGATCACCGAGCCGGCGGCGGACCTGGCGGTGCTGCTGG
CGATCCATTCGTCGATGCGCAACAAGCCGCTGCCGCGCGGGCTGGTGGTTTTCGGCGAGATCGGGCTGGCCGGCGAGATC
CGTCCGACGCCGCGCGGGCAGGAGCGCCTGAAGGAAGCGGCCAAGCTGGGCTTCTCGATTGCCGTGATCCCCAAGTCGAA
CGCGCCCAAGCAGCCGATCGACGGCCTGCAGGTGATCGCCGTCGAGCGCATCGAGCAGGCGATCGACCGGGTGCGCGGGC
TGGAGGCTTAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(362-448)

AAA domain (AAA_25)

(65-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8XZM3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

48.904

100

0.489
  radA Streptococcus pneumoniae Rx1

46.93

100

0.469
  radA Streptococcus pneumoniae D39

46.93

100

0.469
  radA Streptococcus pneumoniae TIGR4

46.93

100

0.469
  radA Streptococcus pneumoniae R6

46.93

100

0.469
  radA Streptococcus mitis SK321

47.124

99.123

0.467
  radA Streptococcus mitis NCTC 12261

46.903

99.123

0.465