Detailed information NTG0949368

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACHGPQ_RS08110
• Genome accession: NZ_CP171856
• Coordinates: 1688035..1689168 (+)
• Length: 377 a.a.
• NCBI ID: WP_011001157.1
• Uniprot ID: Q8Y037
• Organism: Ralstonia pseudosolanacearum strain NIB_Z_3685
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1683035..1694168

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACHGPQ_RS08085 (ACHGPQ_08085)	-	1683111..1684217 (+)	1107	WP_197369543.1	alkene reductase	-
ACHGPQ_RS08090 (ACHGPQ_08090)	-	1684295..1685269 (-)	975	WP_197346375.1	NADPH:quinone oxidoreductase family protein	-
ACHGPQ_RS08095 (ACHGPQ_08095)	surE	1685461..1686216 (+)	756	WP_011001154.1	5'/3'-nucleotidase SurE	-
ACHGPQ_RS08100 (ACHGPQ_08100)	-	1686232..1687197 (+)	966	WP_200763420.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACHGPQ_RS08105 (ACHGPQ_08105)	-	1687199..1688026 (+)	828	WP_016725833.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACHGPQ_RS08110 (ACHGPQ_08110)	rpoS	1688035..1689168 (+)	1134	WP_011001157.1	RNA polymerase sigma factor RpoS	Regulator
ACHGPQ_RS08115 (ACHGPQ_08115)	-	1689202..1690071 (-)	870	WP_197369130.1	endonuclease/exonuclease/phosphatase family protein	-
ACHGPQ_RS08120 (ACHGPQ_08120)	rlmD	1690226..1691578 (+)	1353	WP_020831713.1	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	-
ACHGPQ_RS08125 (ACHGPQ_08125)	-	1691662..1692363 (-)	702	WP_197369129.1	Bax inhibitor-1/YccA family protein	-
ACHGPQ_RS08130 (ACHGPQ_08130)	ndk	1692732..1693157 (+)	426	WP_197369128.1	nucleoside-diphosphate kinase	-

Sequence

Protein

• Length: 377 a.a.
• Molecular weight: 41830.76 Da
• Isoelectric Point: 4.6833

>NTDB_id=949368 ACHGPQ_RS08110 WP_011001157.1 1688035..1689168(+) (rpoS) [Ralstonia pseudosolanacearum strain NIB_Z_3685]
MPRQKAATSANPADETIGAVDGPNAPNGRSGRRARGAAPAASDDVEVVDPLIDEAPAAEPADIADTSDANDSADESDEED
EDGEEAAPEEDFRTVLQAELAADTVQHYLNRISIKPLLTPAEELHFSTLAKAGEFAARQVMIERNLRLVVSIAKGYLNRG
VPLLDLIEEGNLGLMHAIEKFDPERGFRFSTYATWWIRQSIERAIMNQARTVRLPVHVIRELNQVLRAKRHLEKSGIDGR
DASIEDIAHLLGKTTEEVQDVLSLNEHTTSLDTPFDLDPGTSLLDFLSDEHGASPDQEVAHRELSQLMKSWLARLSDKHR
YVVERRFGLNHIEPATLEELAAEMGLTRERVRQIQQEALVKLKRHFASQGVRKDAVL

Nucleotide

• Length: 1134 bp

>NTDB_id=949368 ACHGPQ_RS08110 WP_011001157.1 1688035..1689168(+) (rpoS) [Ralstonia pseudosolanacearum strain NIB_Z_3685]
ATGCCGCGCCAGAAAGCCGCCACGTCCGCCAACCCCGCCGATGAGACCATCGGCGCCGTCGATGGCCCGAACGCCCCGAA
CGGGCGTAGCGGGCGGCGTGCGCGCGGCGCAGCGCCGGCAGCCTCCGATGACGTCGAAGTCGTCGATCCCCTGATCGATG
AGGCGCCTGCCGCCGAGCCCGCTGACATCGCCGATACCTCGGACGCCAACGACAGCGCCGACGAATCCGACGAAGAGGAC
GAGGACGGCGAGGAAGCCGCGCCTGAGGAAGACTTCCGCACGGTGTTGCAGGCCGAGCTGGCCGCTGACACCGTCCAGCA
TTACCTGAACCGCATCAGCATCAAGCCGCTGCTGACGCCGGCGGAGGAGCTGCACTTCTCCACGCTGGCCAAGGCAGGCG
AGTTCGCCGCGCGGCAGGTGATGATCGAGCGCAATCTGCGCCTGGTGGTCAGTATCGCCAAGGGCTATCTGAACCGCGGC
GTGCCGCTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATGCACGCGATCGAGAAATTCGATCCGGAGCGCGGCTT
CCGTTTCTCCACGTATGCCACGTGGTGGATCCGCCAGAGCATCGAGCGGGCCATCATGAACCAGGCGCGCACCGTCCGCC
TGCCGGTGCACGTGATCCGCGAGCTCAACCAGGTGCTGCGCGCCAAGCGCCATCTGGAAAAGAGCGGCATCGATGGCCGC
GACGCCAGCATCGAAGACATTGCGCACCTGCTCGGCAAGACCACCGAGGAGGTGCAGGACGTGCTTTCGCTCAACGAGCA
CACGACCTCGCTCGATACGCCGTTCGACCTGGATCCGGGCACCAGCCTGCTCGATTTCCTTTCGGACGAGCATGGCGCCT
CGCCAGACCAGGAAGTCGCGCACCGCGAGTTGTCGCAGCTGATGAAATCCTGGCTGGCACGGCTGTCCGACAAGCACCGC
TACGTGGTGGAACGCCGGTTCGGCCTTAACCACATCGAGCCGGCCACCCTCGAAGAGCTGGCCGCCGAGATGGGCCTGAC
GCGCGAGCGTGTGCGTCAGATCCAGCAGGAAGCGCTGGTCAAGCTCAAGCGGCACTTCGCCTCGCAAGGCGTGCGCAAGG
ATGCGGTGCTGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (221-298)

• Sigma-70, region 4 (Sigma70_r4) (311-363)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (103-136)

• Sigma-70 region 2 (Sigma70_r2) (141-210)

3D structure

• AlphaFold DB: Q8Y037

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	50.903	73.475	0.374