Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ACHGPQ_RS05370 Genome accession   NZ_CP171856
Coordinates   1138336..1138779 (+) Length   147 a.a.
NCBI ID   WP_071615340.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain NIB_Z_3685     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1133336..1143779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHGPQ_RS05340 (ACHGPQ_05340) - 1133438..1134286 (-) 849 WP_200763399.1 TPM domain-containing protein -
  ACHGPQ_RS05345 (ACHGPQ_05345) - 1134299..1134925 (-) 627 WP_016723449.1 LemA family protein -
  ACHGPQ_RS05350 (ACHGPQ_05350) - 1135017..1135181 (+) 165 WP_162913632.1 hypothetical protein -
  ACHGPQ_RS05355 (ACHGPQ_05355) dapA 1135309..1136223 (+) 915 WP_197369510.1 4-hydroxy-tetrahydrodipicolinate synthase -
  ACHGPQ_RS05360 (ACHGPQ_05360) hemL 1136326..1137627 (-) 1302 WP_011000623.1 glutamate-1-semialdehyde 2,1-aminomutase -
  ACHGPQ_RS05365 (ACHGPQ_05365) - 1137839..1138021 (+) 183 WP_003261842.1 rubredoxin -
  ACHGPQ_RS05370 (ACHGPQ_05370) pilG 1138336..1138779 (+) 444 WP_071615340.1 response regulator Regulator
  ACHGPQ_RS05375 (ACHGPQ_05375) pilH 1138811..1139179 (+) 369 WP_003269243.1 response regulator Machinery gene
  ACHGPQ_RS05380 (ACHGPQ_05380) - 1139238..1139783 (+) 546 WP_028852678.1 chemotaxis protein CheW -
  ACHGPQ_RS05385 (ACHGPQ_05385) - 1140029..1142260 (+) 2232 WP_011000626.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 15807.37 Da        Isoelectric Point: 8.2887

>NTDB_id=949360 ACHGPQ_RS05370 WP_071615340.1 1138336..1138779(+) (pilG) [Ralstonia pseudosolanacearum strain NIB_Z_3685]
MQSARVEQLTNSQPLASSLAGRKVLVIDDSSTIRRTAQIFLSKVDCQVVLAEDGFDALAKLGDFKPDIVFCDILMPKLDG
YLTCSLIKKSPKFHATPVVMLSSRDGVFDRARGKLVGAVDHLAKPFSREALLEAVQAHLPAAAGAAQ

Nucleotide


Download         Length: 444 bp        

>NTDB_id=949360 ACHGPQ_RS05370 WP_071615340.1 1138336..1138779(+) (pilG) [Ralstonia pseudosolanacearum strain NIB_Z_3685]
ATGCAATCCGCGCGGGTGGAACAACTGACCAATTCCCAACCGCTGGCGAGTTCGCTTGCCGGCCGTAAAGTGCTGGTGAT
CGACGATTCCAGTACCATCCGCCGTACCGCGCAGATTTTCCTGTCCAAGGTCGATTGCCAGGTCGTGCTGGCCGAAGACG
GGTTCGATGCGCTGGCCAAGCTGGGTGACTTCAAGCCGGACATCGTCTTTTGCGACATCCTGATGCCCAAGCTGGACGGT
TACCTGACCTGCTCACTGATCAAGAAAAGCCCGAAGTTTCATGCCACGCCCGTGGTCATGCTGTCGTCGCGCGACGGGGT
GTTCGACCGCGCGCGCGGCAAGCTGGTCGGGGCGGTGGACCACCTTGCCAAGCCTTTCTCGCGGGAAGCGCTGCTGGAGG
CGGTCCAGGCGCATCTGCCGGCAGCCGCTGGCGCCGCGCAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(24-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

54.622

80.952

0.442