Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACHGLA_RS34945 Genome accession   NZ_CP171841
Coordinates   7894129..7895178 (+) Length   349 a.a.
NCBI ID   WP_395366554.1    Uniprot ID   -
Organism   Streptomyces sp. YH02     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 7889129..7900178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHGLA_RS34930 (ACHGLA_34930) - 7890875..7891705 (-) 831 WP_395366548.1 carbohydrate ABC transporter permease -
  ACHGLA_RS34935 (ACHGLA_34935) - 7891705..7892652 (-) 948 WP_395366550.1 carbohydrate ABC transporter permease -
  ACHGLA_RS34940 (ACHGLA_34940) - 7892669..7893976 (-) 1308 WP_395366552.1 ABC transporter substrate-binding protein -
  ACHGLA_RS34945 (ACHGLA_34945) cytR 7894129..7895178 (+) 1050 WP_395366554.1 LacI family DNA-binding transcriptional regulator Regulator
  ACHGLA_RS34950 (ACHGLA_34950) - 7895471..7896991 (+) 1521 WP_318210394.1 catalase -
  ACHGLA_RS34955 (ACHGLA_34955) - 7897024..7898166 (-) 1143 WP_395366555.1 mechanosensitive ion channel family protein -
  ACHGLA_RS34960 (ACHGLA_34960) - 7898343..7898567 (+) 225 WP_395366557.1 DUF6458 family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37811.32 Da        Isoelectric Point: 6.7751

>NTDB_id=949335 ACHGLA_RS34945 WP_395366554.1 7894129..7895178(+) (cytR) [Streptomyces sp. YH02]
MRDGEESRRITLAEVAQQAGVSLSTVSKVLNGRQDVSSGTRVKVERLLEAHAYRRTTRVAREAPLIELVFHELDSVWSME
LIRGVENLAKAHRASVVLTESGTRHAPAPDWIEGVLQRRPIGVVLVFSSLPDAVKRQLGARSIPFVIVDPAGDPEPDVPS
VGSANWTGGVAATRHLLDLGHRRIGIITGPEDMLCSLARLDGYRSALNMAGLAHDPSLVRFGDFHVEGGYARAMELLRLP
DRPTAVFAGSDLQALGVMEAARVCGLRVPEDLSVVGYDDVMIARWSSPPLTTIHQPLREMGEEAVQMLLRLRAGEPSVTR
MELTTSLVVRKSTAPPPARVQAGGAETAE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=949335 ACHGLA_RS34945 WP_395366554.1 7894129..7895178(+) (cytR) [Streptomyces sp. YH02]
ATGCGAGATGGCGAGGAGAGCAGGCGAATCACGCTGGCGGAAGTAGCGCAGCAGGCCGGGGTGTCACTTTCGACAGTTTC
GAAAGTTCTCAACGGCCGACAGGACGTTTCGTCGGGCACCCGCGTCAAGGTCGAGCGGCTCCTCGAAGCGCACGCCTACC
GGCGGACCACCCGCGTCGCCAGGGAGGCGCCCCTCATCGAACTCGTCTTCCACGAGCTCGACAGCGTCTGGTCGATGGAG
CTGATCCGCGGGGTGGAGAACCTCGCCAAGGCTCACCGGGCGAGCGTGGTGCTGACCGAGAGCGGAACCCGGCACGCCCC
GGCGCCGGACTGGATCGAGGGAGTCCTGCAGCGCCGGCCGATCGGCGTGGTCCTGGTGTTCTCCTCCCTCCCCGACGCCG
TCAAGCGACAGCTCGGCGCGCGGTCGATCCCCTTCGTGATCGTCGACCCGGCGGGGGACCCCGAACCAGACGTGCCGTCC
GTCGGTTCGGCGAACTGGACCGGCGGCGTCGCCGCGACCCGCCACCTCCTCGACCTCGGGCACCGTCGCATCGGCATCAT
CACCGGCCCCGAGGACATGCTGTGTTCCCTGGCCCGGCTCGACGGCTACCGGTCAGCGTTGAACATGGCCGGCCTCGCCC
ACGACCCCTCTCTCGTCAGGTTCGGCGACTTCCACGTCGAGGGCGGCTATGCGCGGGCCATGGAGCTGTTGCGGCTGCCG
GACCGACCCACCGCCGTCTTCGCCGGAAGCGACCTGCAGGCGCTCGGCGTCATGGAGGCGGCCCGGGTCTGCGGGCTGCG
CGTGCCCGAGGACCTGTCCGTCGTCGGATACGACGACGTGATGATCGCGCGCTGGTCGAGCCCCCCGCTCACCACGATCC
ACCAGCCGCTGCGCGAGATGGGCGAGGAGGCGGTGCAGATGCTGCTCCGCCTGCGTGCCGGGGAGCCCTCGGTGACCCGC
ATGGAGCTCACGACCAGCCTCGTCGTCAGGAAGAGCACCGCCCCACCACCCGCGCGCGTCCAGGCGGGTGGCGCGGAGAC
CGCGGAGTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(173-333)

Bacterial regulatory proteins, lacI family (LacI)

(11-54)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

37.798

96.275

0.364
  cytR Vibrio parahaemolyticus RIMD 2210633

37.838

95.415

0.361