Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   WFA80_RS01890 Genome accession   NZ_CP147891
Coordinates   377203..378582 (+) Length   459 a.a.
NCBI ID   WP_020807202.1    Uniprot ID   A0AB33CAD2
Organism   Lactobacillus gasseri strain CUDS2831     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 372203..383582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WFA80_RS01860 - 372856..373113 (+) 258 WP_020807208.1 hypothetical protein -
  WFA80_RS01865 - 373115..373300 (+) 186 WP_020807207.1 hypothetical protein -
  WFA80_RS01870 - 373319..373996 (+) 678 WP_065169772.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase -
  WFA80_RS01875 - 374106..375041 (+) 936 WP_003649435.1 AAA family ATPase -
  WFA80_RS01880 pepC 375108..376457 (-) 1350 WP_020807204.1 aminopeptidase C -
  WFA80_RS01885 - 376652..377203 (+) 552 WP_003649433.1 dUTP diphosphatase -
  WFA80_RS01890 radA 377203..378582 (+) 1380 WP_020807202.1 DNA repair protein RadA Machinery gene
  WFA80_RS01895 gltX 378664..380163 (+) 1500 WP_003649431.1 glutamate--tRNA ligase -
  WFA80_RS01900 cysS 380257..381669 (+) 1413 WP_020807201.1 cysteine--tRNA ligase -
  WFA80_RS01905 - 381662..382105 (+) 444 WP_003649429.1 ribonuclease III domain-containing protein -
  WFA80_RS01910 rlmB 382092..382880 (+) 789 WP_065169774.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50113.68 Da        Isoelectric Point: 7.6588

>NTDB_id=949311 WFA80_RS01890 WP_020807202.1 377203..378582(+) (radA) [Lactobacillus gasseri strain CUDS2831]
MAKVKTRYKCRNCGYISASYLGRCPNCGAWNQFEEETQEVKKVSTKATASRLMTKIGNNDPVKLNEVKAEKEKRIVTPFE
ELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQITGALAKEHSVLYVSGEESASQIKMRADRLGVSNSGILLYPETNMQNI
REQIDEIKPDFLVIDSIQTMNEPSLDSMVGSASQVREVTSELMKIAKNDQITTFVIGHVTKEGAIAGPKIMEHMVDTVLY
FEGDGHHSYRILRSVKNRFGAANEIGMFEMKNEGLTEVNNPSAIFLDERLPNSTGSAVVVSLEGTRPLLADIQALVTPTA
FGYAKRTTSGLDFNRVALLLAVLEKRGNLMLQNQDAFLTATGGIKLNEPAIDLAICMAVASSYKNKEISSTDCFVGEAGL
TGEIRRVNQIEARVKEAAKVGFKRIFIPKHNLTTELKNNSEIEVIGVASLPQALKLVFN

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=949311 WFA80_RS01890 WP_020807202.1 377203..378582(+) (radA) [Lactobacillus gasseri strain CUDS2831]
ATGGCAAAAGTTAAAACACGTTATAAGTGCCGTAATTGTGGTTATATTTCAGCTTCTTATTTAGGTAGATGCCCTAATTG
CGGTGCCTGGAATCAATTTGAAGAAGAAACGCAAGAAGTAAAAAAAGTATCAACCAAGGCAACTGCTAGTCGCTTAATGA
CTAAAATTGGAAATAATGATCCAGTAAAATTAAATGAAGTAAAAGCTGAAAAAGAAAAAAGAATTGTAACTCCTTTTGAA
GAACTAAATCGAGTTCTAGGAGGCGGAATAGTTCCGGGTTCTTTAGTTTTAATTGGTGGAGATCCTGGAATTGGTAAGTC
AACTTTGATGCTTCAAATTACCGGTGCTTTAGCTAAAGAGCATAGTGTTTTATATGTTTCAGGAGAAGAGTCGGCTAGTC
AGATAAAGATGCGAGCTGATCGTTTAGGTGTAAGCAACAGCGGAATTTTGCTTTATCCTGAAACCAATATGCAGAATATT
CGTGAACAGATTGATGAAATTAAGCCGGATTTTTTGGTAATCGACTCTATCCAAACAATGAATGAGCCATCTCTTGATTC
GATGGTTGGATCAGCTTCTCAAGTTCGAGAAGTTACGAGTGAGTTAATGAAGATTGCCAAGAATGATCAGATTACTACTT
TTGTTATTGGACATGTGACTAAAGAAGGTGCAATTGCTGGCCCTAAGATTATGGAACATATGGTTGATACTGTCCTTTAC
TTTGAAGGGGATGGCCACCATTCATATCGAATTTTAAGGTCTGTCAAAAATCGTTTTGGTGCAGCTAATGAGATTGGTAT
GTTTGAAATGAAAAATGAAGGACTAACAGAAGTAAATAATCCTTCAGCGATTTTCTTAGACGAACGTTTACCAAATTCTA
CAGGTTCAGCAGTTGTCGTTTCGCTTGAAGGAACAAGGCCACTTCTAGCCGATATTCAAGCTTTGGTAACTCCAACTGCC
TTTGGCTATGCTAAAAGAACTACGTCGGGGTTAGATTTCAATCGTGTAGCCTTATTATTAGCGGTTTTAGAAAAACGTGG
TAACTTAATGTTACAAAATCAAGATGCATTTTTAACGGCAACAGGTGGAATTAAATTAAATGAGCCAGCGATTGACTTGG
CAATTTGTATGGCTGTAGCTTCTAGTTATAAAAATAAAGAAATTTCTTCTACTGATTGTTTTGTAGGCGAAGCTGGCTTA
ACCGGTGAAATTAGAAGAGTTAATCAAATTGAAGCTAGAGTTAAAGAAGCTGCTAAAGTAGGCTTTAAGCGAATTTTTAT
TCCAAAACATAATTTAACTACTGAGCTTAAGAATAATTCTGAGATTGAAGTAATTGGTGTAGCAAGTTTGCCGCAAGCTT
TAAAACTGGTTTTTAATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)

AAA domain (AAA_25)

(68-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

60.044

99.782

0.599
  radA Streptococcus pneumoniae Rx1

60.044

99.782

0.599
  radA Streptococcus pneumoniae D39

60.044

99.782

0.599
  radA Streptococcus pneumoniae R6

60.044

99.782

0.599
  radA Streptococcus pneumoniae TIGR4

60.044

99.782

0.599
  radA Streptococcus mitis NCTC 12261

60.044

99.782

0.599
  radA Bacillus subtilis subsp. subtilis str. 168

55.702

99.346

0.553